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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
462.8
nTPM
FANTOM5:
413.0
Scaled Tags Per Million
Pig:
93.5
nTPM
Allen mouse:
5.3
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
462.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 364.3
2188
Female, age 91, both hemispheres
461.3
2090
Male, age 80, both hemispheres
399.5
2301
Female, age 85, both hemispheres
392.7
1984
Male, age 76, both hemispheres
203.7
Dorsal cochlear nucleus nTPM: 335.7
2378
Male, age 80, both hemispheres
397.1
2187
Female, age 91, both hemispheres
389.4
2802
Male, age 74, right hemisphere
322.3
2058
Male, age 76, both hemispheres
297.1
2370
Male, age 61, both hemispheres
272.7
Dorsal tegmental nucleus nTPM: 306.6
2083
Male, age 80, both hemispheres
404.6
2326
Male, age 74, both hemispheres
340.1
1936
Male, age 76, left hemisphere
259.4
2358
Male, age 61, both hemispheres
222.2
Dorsolateral tegmental area nTPM: 326.8
2751
Female, age 85, both hemispheres
461.5
2654
Male, age 80, both hemispheres
408.2
2337
Male, age 61, both hemispheres
369.7
2360
Male, age 74, both hemispheres
223.9
2141
Male, age 76, both hemispheres
170.9
Kolliker-Fuse nucleus nTPM: 354.7
2793
Female, age 91, left hemisphere
533.3
2163
Male, age 80, both hemispheres
326.7
2315
Male, age 76, right hemisphere
204.2
Lateral lemniscal nuclei nTPM: 363.2
2320
Female, age 91, left hemisphere
477.5
2746
Female, age 85, left hemisphere
347.3
2036
Male, age 80, both hemispheres
337.3
2453
Male, age 74, right hemisphere
334.4
2169
Male, age 76, both hemispheres
319.3
Lateral parabrachial nucleus nTPM: 385.4
2792
Male, age 76, both hemispheres
575.1
2013
Male, age 80, both hemispheres
460.9
2139
Female, age 85, right hemisphere
266.1
2790
Male, age 61, both hemispheres
239.7
Lateral vestibular nucleus nTPM: 337.1
2311
Male, age 80, both hemispheres
353.2
2184
Male, age 76, both hemispheres
321.0
Locus coeruleus nTPM: 190.0
2720
Male, age 74, both hemispheres
253.8
2162
Male, age 80, both hemispheres
233.9
2317
Female, age 72, unknown
197.5
2788
Male, age 74, unknown
196.9
2014
Male, age 55, unknown
168.8
2123
Female, age 91, both hemispheres
163.5
1980
Male, age 76, both hemispheres
116.0
Medial parabrachial nucleus nTPM: 359.4
2854
Male, age 80, both hemispheres
434.3
2170
Female, age 91, both hemispheres
417.4
2786
Male, age 76, both hemispheres
352.9
2463
Female, age 85, right hemisphere
340.5
2156
Male, age 61, both hemispheres
251.7
Medial periolivary nuclei nTPM: 327.8
2081
Male, age 80, both hemispheres
425.5
2458
Female, age 91, both hemispheres
386.4
2791
Male, age 74, right hemisphere
329.3
2063
Male, age 76, both hemispheres
287.5
2171
Female, age 85, both hemispheres
210.4
Motor facial nucleus nTPM: 351.6
2697
Female, age 85, both hemispheres
441.3
2126
Male, age 61, both hemispheres
394.5
2365
Male, age 74, right hemisphere
365.6
2327
Male, age 80, both hemispheres
339.8
2795
Female, age 91, both hemispheres
318.7
2062
Male, age 76, both hemispheres
249.8
Motor trigeminal nucleus nTPM: 350.1
2560
Male, age 74, both hemispheres
391.8
2321
Female, age 91, both hemispheres
381.6
2309
Male, age 76, both hemispheres
349.7
2079
Male, age 80, both hemispheres
329.4
2335
Male, age 61, both hemispheres
297.9
Nuclei of the trapezoid body nTPM: 303.1
2166
Male, age 80, both hemispheres
373.3
2368
Female, age 91, both hemispheres
354.8
2159
Male, age 61, both hemispheres
336.2
1983
Male, age 76, both hemispheres
271.7
2735
Female, age 85, both hemispheres
179.5
Nucleus raphe magnus nTPM: 323.1
2459
Female, age 91, both hemispheres
478.3
2328
Male, age 80, both hemispheres
384.1
2051
Male, age 76, both hemispheres
364.4
2455
Male, age 74, both hemispheres
293.2
2160
Male, age 61, both hemispheres
231.1
2172
Female, age 85, both hemispheres
187.6
Paramedian reticular nucleus nTPM: 374.4
2052
Male, age 76, both hemispheres
463.8
2050
Female, age 85, both hemispheres
396.4
2057
Male, age 80, both hemispheres
355.2
2313
Male, age 61, both hemispheres
282.2
Pedunculopontine tegmental nucleus nTPM: 310.8
2334
Male, age 80, both hemispheres
336.3
2338
Male, age 61, both hemispheres
320.3
1921
Female, age 85, both hemispheres
275.9
Pontine nuclei nTPM: 382.3
2454
Male, age 74, left hemisphere
534.1
2319
Female, age 91, both hemispheres
483.0
2115
Male, age 80, left hemisphere
369.8
2109
Female, age 72, unknown
363.8
1863
Male, age 55, unknown
355.6
1968
Male, age 76, left hemisphere
354.3
2727
Male, age 61, right hemisphere
336.9
2787
Female, age 85, both hemispheres
260.7
Pontine raphe nucleus nTPM: 271.7
2122
Female, age 85, midline
279.9
2853
Male, age 76, midline
263.4
Posteroventral cochlear nucleus nTPM: 425.4
2341
Male, age 80, both hemispheres
562.8
2135
Female, age 91, both hemispheres
538.9
2070
Male, age 76, both hemispheres
398.7
2371
Male, age 61, both hemispheres
324.3
2752
Female, age 85, both hemispheres
302.1
Principal sensory trigeminal nucleus nTPM: 340.1
2367
Female, age 91, left hemisphere
505.2
2008
Male, age 80, left hemisphere
308.4
2324
Male, age 76, both hemispheres
303.3
2158
Male, age 61, both hemispheres
243.8
Reticular pontine nucleus, caudal nTPM: 399.8
2457
Female, age 91, both hemispheres
482.3
2559
Male, age 74, both hemispheres
417.1
2092
Male, age 76, both hemispheres
371.6
2332
Male, age 80, right hemisphere
328.1
Reticular pontine nucleus, oral nTPM: 462.8
2361
Male, age 74, both hemispheres
551.7
2366
Female, age 91, both hemispheres
519.9
1939
Male, age 80, both hemispheres
436.8
2012
Female, age 85, both hemispheres
404.6
2167
Male, age 76, both hemispheres
401.2
Reticulotegmental nucleus nTPM: 328.2
2322
Female, age 91, both hemispheres
392.4
2452
Male, age 74, both hemispheres
365.3
2333
Male, age 80, both hemispheres
346.2
2325
Male, age 76, both hemispheres
208.8
Spinal trigeminal nucleus, oral nTPM: 304.9
2164
Male, age 80, both hemispheres
350.9
1978
Male, age 76, both hemispheres
320.8
2737
Female, age 85, both hemispheres
243.0
Subcoeruleus area nTPM: 351.0
2369
Female, age 85, left hemisphere
569.3
1958
Male, age 80, both hemispheres
342.7
2089
Male, age 76, left hemisphere
316.4
2451
Male, age 74, both hemispheres
274.3
2323
Female, age 91, left hemisphere
252.2
Superior olive nTPM: 382.7
2020
Male, age 76, both hemispheres
448.7
2329
Male, age 80, right hemisphere
405.4
2364
Male, age 74, right hemisphere
365.5
2561
Female, age 91, both hemispheres
352.0
1875
Female, age 85, both hemispheres
341.7
Ventral periolivary nuclei nTPM: 320.6
2023
Male, age 76, both hemispheres
472.7
2165
Male, age 80, both hemispheres
289.4
2794
Female, age 91, left hemisphere
287.2
2130
Female, age 85, both hemispheres
232.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 384.6
2456
Female, age 91, both hemispheres
451.8
2840
Female, age 85, both hemispheres
433.7
1959
Male, age 76, both hemispheres
390.4
2161
Male, age 80, both hemispheres
356.7
2359
Male, age 61, both hemispheres
346.0
2449
Male, age 74, both hemispheres
329.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.5
Pig sample
Sample description
nTPM
Pons nTPM: 93.5
Samples: 4
Max nTPM: 135.4
Min nTPM: 69.5
Sample A
Female
76.0
Sample B
Female
69.5
Sample C
Male
93.1
Sample D
Male
135.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
