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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:945.1 nTPM
HPA Brain:592.5 nTPM
GTEx:945.1 nTPM
FANTOM5:1862.1 Scaled Tags Per Million
Pig:1027.2 nTPM
Mouse:1540.2 nTPM
Allen mouse:19.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

592.5
Sample id Sample description nTPM
Amygdala
nTPM: 578.4
2514 Male, age 75, right hemisphere 940.8
1987 Female, age 91, left hemisphere 673.7
2517 Female, age 94, left hemisphere 627.6
2695 Female, age 67, right hemisphere 366.4
2814 Male, age 76, right hemisphere 283.6
Basal amygdala
nTPM: 543.1
2609 Male, age 75, right hemisphere 928.5
2243 Female, age 91, right hemisphere 591.2
2110 Male, age 80, left hemisphere 574.7
2685 Female, age 94, left hemisphere 540.9
1955 Male, age 76, both hemispheres 377.0
2827 Female, age 67, right hemisphere 246.5
Central amygdala
nTPM: 514.9
2701 Female, age 91, right hemisphere 716.0
2515 Male, age 75, right hemisphere 643.5
2239 Male, age 80, left hemisphere 609.8
2826 Female, age 94, left hemisphere 432.0
1905 Male, age 76, both hemispheres 173.0
Corticomedial amygdala
nTPM: 592.5
2242 Female, age 91, right hemisphere 779.6
2428 Male, age 75, right hemisphere 773.8
2429 Female, age 94, left hemisphere 737.5
2829 Male, age 80, left hemisphere 566.5
2240 Male, age 76, both hemispheres 368.2
2535 Female, age 67, right hemisphere 329.4
Lateral amygdala
nTPM: 477.4
2516 Male, age 75, right hemisphere 824.7
2255 Female, age 91, right hemisphere 569.4
2256 Male, age 80, left hemisphere 499.0
2534 Female, age 94, left hemisphere 433.8
1883 Male, age 76, both hemispheres 271.6
2830 Female, age 67, right hemisphere 266.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

945.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 945.1
Samples: 152

Max nTPM: 2679.1
Min nTPM: 228.8
Std nTPM: 462.5
Median nTPM: 902.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2679.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2453.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2116.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2107.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2065.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2058.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1988.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1868.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1686.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1601.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1579.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1562.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1557.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1547.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1542.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1509.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1482.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1436.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1432.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1397.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1390.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1378.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1376.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1376.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1374.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1372.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1359.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1347.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1345.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1329.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1320.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1311.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1304.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1257.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1255.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1244.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1243.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1237.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1226.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1195.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1190.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1181.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1178.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1170.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1164.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1145.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1142.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1118.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1116.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1115.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1114.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1108.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1089.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1075.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1072.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1057.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1053.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1045.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1042.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1040.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1037.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1019.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 995.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 990.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 986.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 976.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 960.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 953.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 946.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 940.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 939.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 933.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 923.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 915.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 912.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 908.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 896.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 895.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 891.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 883.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 881.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 872.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 852.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 842.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 839.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 813.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 808.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 795.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 788.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 780.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 773.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 765.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 763.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 759.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 746.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 736.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 721.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 678.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 662.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 658.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 651.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 646.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 634.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 624.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 613.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 611.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 611.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 610.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 607.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 607.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 596.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 595.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 579.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 568.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 567.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 566.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 557.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 553.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 548.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 546.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 541.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 538.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 537.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 520.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 512.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 503.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 495.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 486.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 484.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 476.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 471.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 469.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 464.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 462.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 461.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 454.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 444.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 443.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 407.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 390.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 371.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 356.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 354.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 336.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 323.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 315.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 276.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 265.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 263.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 256.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 253.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 228.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1862.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1862.1
FF:10151-102I7 76 years, female 1862.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1027.2
Pig sample Sample description nTPM
Amygdala
nTPM: 1027.2
Samples: 4

Max nTPM: 1212.8
Min nTPM: 889.2
Sample A Female 1212.8
Sample B Female 1068.7
Sample C Male 889.2
Sample D Male 938.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1540.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1540.2
Samples: 4

Max nTPM: 1738.7
Min nTPM: 1425.1
Sample A Male 1425.1
Sample B Male 1428.8
Sample C Female 1738.7
Sample D Female 1568.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.1
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 20.2
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 18.1

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