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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1285.7 nTPM
HPA Brain:903.8 nTPM
GTEx:1285.7 nTPM
FANTOM5:2412.3 Scaled Tags Per Million
Pig:949.7 nTPM
Mouse:1469.1 nTPM
Allen mouse:17.9 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB026225
Glial cells High
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

903.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 903.8
2481 Female, age 94, left hemisphere 1501.5
2288 Male, age 75, left hemisphere 1038.3
2290 Female, age 72, unknown 1005.2
1854 Male, age 80, left hemisphere 861.1
1857 Female, age 85, left hemisphere 853.2
2846 Female, age 79, unknown 696.7
1781 Male, age 74, unknown 663.6
2289 Male, age 61, right hemisphere 611.2
Globus pallidus, externus
nTPM: 506.8
1996 Male, age 80, right hemisphere 685.7
2646 Male, age 61, right hemisphere 648.0
2772 Female, age 79, unknown 460.4
2395 Male, age 75, both hemispheres 441.2
2567 Female, age 72, unknown 298.9
Globus pallidus, internus
nTPM: 500.0
2483 Female, age 94, right hemisphere 901.5
2037 Male, age 80, right hemisphere 620.9
1818 Male, age 74, unknown 610.9
2287 Male, age 75, right hemisphere 491.4
2778 Female, age 91, both hemispheres 367.2
2566 Female, age 72, unknown 280.6
2111 Female, age 85, right hemisphere 227.6
Nucleus accumbens
nTPM: 739.8
2286 Male, age 75, left hemisphere 1115.1
2391 Female, age 94, left hemisphere 898.0
1856 Female, age 91, right hemisphere 771.9
2698 Female, age 72, unknown 754.5
1806 Female, age 85, left hemisphere 710.4
1783 Male, age 74, unknown 665.5
2824 Male, age 61, right hemisphere 542.5
2732 Male, age 80, right hemisphere 460.3
Nucleus basalis of Meynert
nTPM: 660.5
2569 Male, age 61, both hemispheres 741.0
2393 Male, age 80, right hemisphere 688.5
2484 Female, age 94, left hemisphere 652.3
2821 Male, age 75, both hemispheres 560.1
Nucleus of the diagonal band
nTPM: 495.0
2029 Male, age 61, right hemisphere 606.6
1812 Female, age 91, both hemispheres 587.4
2775 Male, age 80, right hemisphere 546.7
2195 Female, age 85, both hemispheres 524.5
1979 Male, age 74, unknown 209.6
Putamen
nTPM: 711.8
2482 Female, age 94, left hemisphere 1229.7
1838 Male, age 80, right hemisphere 809.9
1937 Female, age 91, right hemisphere 642.0
2489 Female, age 72, unknown 630.1
1829 Male, age 74, unknown 602.8
2647 Male, age 75, left hemisphere 536.1
2466 Female, age 79, unknown 532.2
Septal nuclei
nTPM: 486.7
2031 Female, age 72, unknown 737.3
2629 Female, age 94, right hemisphere 603.1
1960 Male, age 74, unknown 572.3
2009 Female, age 91, both hemispheres 424.7
2059 Female, age 85, both hemispheres 400.4
2199 Male, age 80, right hemisphere 394.5
2394 Male, age 61, left hemisphere 274.9
Stria terminalis, bed nucleus
nTPM: 497.0
2486 Female, age 94, both hemispheres 557.2
1974 Female, age 91, both hemispheres 520.4
2201 Male, age 74, unknown 413.2

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1285.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1285.7
Samples: 246

Max nTPM: 3017.6
Min nTPM: 170.7
Std nTPM: 517.5
Median nTPM: 1214.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3017.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2924.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2866.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2766.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2412.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2409.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2399.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2397.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2352.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2340.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2320.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2237.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2222.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2167.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2167.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2156.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2143.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2112.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2090.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2064.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2052.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2013.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1979.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1979.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1938.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1935.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1932.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1929.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1923.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1921.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1902.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1870.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1856.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1840.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1830.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1828.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1812.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1796.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1795.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1794.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1788.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1786.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1782.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1773.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1768.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1764.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1760.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1741.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1729.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1694.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1690.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1685.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1675.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1667.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1665.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1662.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1655.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1631.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1618.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1611.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1610.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1605.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1603.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1595.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1566.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1560.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1537.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1534.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1532.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1529.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1526.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1522.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1522.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1516.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1503.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1498.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1495.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1488.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1488.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1487.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1486.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1465.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1462.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1459.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1453.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1443.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1443.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1428.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1423.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1422.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1411.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1408.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1407.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1402.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1396.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1387.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1386.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1385.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1384.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1347.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1344.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1342.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1341.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1338.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1337.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1336.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1333.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1333.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1331.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1328.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1320.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1312.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1312.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1312.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1287.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1286.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1260.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1250.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1243.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1238.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1237.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1225.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1219.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1210.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1208.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1197.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1196.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1193.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1186.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1176.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1171.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1171.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1170.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1167.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1161.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1147.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1124.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1117.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1117.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1115.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1115.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1112.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1108.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1103.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1090.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1079.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1078.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1074.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1067.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1059.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1059.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1049.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1047.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1047.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1046.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1044.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1043.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1040.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1022.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1012.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1011.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1008.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1005.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1004.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 997.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 997.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 995.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 984.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 981.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 977.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 973.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 968.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 967.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 964.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 962.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 952.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 950.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 948.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 939.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 936.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 936.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 932.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 924.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 923.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 917.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 913.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 904.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 901.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 901.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 900.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 899.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 899.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 898.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 898.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 882.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 873.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 861.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 858.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 855.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 854.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 852.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 835.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 823.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 821.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 816.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 808.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 799.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 794.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 789.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 769.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 764.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 756.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 750.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 741.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 741.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 737.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 730.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 726.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 717.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 711.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 700.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 693.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 689.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 687.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 678.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 675.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 674.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 667.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 655.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 623.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 618.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 618.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 609.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 591.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 588.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 541.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 526.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 477.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 419.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 411.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 287.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 255.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 254.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 216.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 207.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 170.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1087.1
Samples: 246

Max nTPM: 3173.0
Min nTPM: 199.0
Std nTPM: 525.1
Median nTPM: 1038.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3173.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 2940.9
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 2810.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 2747.9
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 2709.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 2329.0
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 2278.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 2189.1
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 2149.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 2089.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 2066.6
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 2056.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 2048.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 2034.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 2029.4
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 2025.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 1971.8
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 1941.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 1902.4
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1898.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 1884.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 1878.5
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1856.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 1836.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 1832.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 1828.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 1825.4
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 1780.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 1780.5
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 1777.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 1755.7
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 1693.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 1689.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 1655.4
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 1633.2
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 1606.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 1600.5
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1594.8
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 1592.3
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1569.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 1546.4
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 1543.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 1534.8
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 1527.8
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 1499.5
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1475.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 1456.8
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 1451.9
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1437.9
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 1431.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 1410.6
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 1404.9
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1399.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1383.9
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 1368.6
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1366.7
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 1364.9
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 1357.4
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1353.6
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 1346.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1343.2
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1339.8
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 1330.3
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1329.0
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 1327.4
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1326.2
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 1324.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 1323.0
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1307.5
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 1305.5
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 1300.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 1292.9
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 1285.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 1280.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 1276.3
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1265.6
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1239.6
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 1213.5
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1210.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 1208.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 1204.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 1195.4
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1187.7
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 1176.6
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1171.7
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1168.8
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1168.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 1163.0
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1162.8
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1162.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1162.1
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1155.9
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 1149.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1145.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1144.7
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1143.9
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1143.1
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1142.8
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 1131.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1127.1
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 1125.9
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1123.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1122.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1117.2
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 1113.3
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1113.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 1099.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 1098.0
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1092.2
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 1090.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1081.4
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 1080.9
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1079.7
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1078.9
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 1063.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 1059.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 1053.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1048.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 1047.8
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1045.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 1044.9
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1041.6
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1039.8
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 1037.8
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 1024.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1018.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 1016.8
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1013.0
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 1003.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 990.3
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 982.6
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 972.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 960.1
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 950.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 949.1
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 947.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 944.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 942.4
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 937.0
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 930.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 920.1
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 916.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 916.1
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 913.4
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 913.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 912.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 910.0
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 909.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 895.2
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 890.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 889.9
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 886.8
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 882.4
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 875.3
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 867.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 865.1
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 864.9
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 861.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 859.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 839.4
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 835.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 831.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 827.1
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 817.4
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 811.4
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 796.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 794.1
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 786.3
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 784.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 783.3
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 783.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 782.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 776.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 774.5
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 773.2
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 773.2
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 769.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 768.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 744.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 733.0
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 721.7
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 721.0
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 719.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 717.9
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 714.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 707.1
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 705.7
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 693.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 692.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 674.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 659.9
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 658.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 654.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 651.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 649.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 644.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 630.5
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 625.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 620.6
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 619.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 617.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 613.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 610.9
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 606.4
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 606.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 594.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 589.4
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 588.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 583.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 574.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 569.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 556.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 539.3
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 538.6
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 533.6
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 531.4
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 522.0
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 521.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 509.4
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 496.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 492.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 480.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 471.0
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 469.2
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 467.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 466.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 454.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 450.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 439.7
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 434.0
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 427.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 424.8
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 414.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 398.4
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 396.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 395.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 381.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 380.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 371.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 289.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 265.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 241.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 235.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 208.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 205.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 199.0
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Brain - Putamen (basal ganglia)
Average nTPM: 1194.2
Samples: 205

Max nTPM: 2960.7
Min nTPM: 246.2
Std nTPM: 516.5
Median nTPM: 1205.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2960.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 2777.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 2654.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 2500.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 2425.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2340.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 2305.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 2272.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 2127.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 2119.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 2107.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2066.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2049.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1997.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1988.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 1940.2
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 1909.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1886.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1857.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1854.5
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1844.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 1786.9
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1777.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1776.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 1749.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 1737.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1731.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 1710.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 1701.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 1697.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 1691.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 1678.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1654.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1651.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1638.5
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 1634.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 1633.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1632.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 1622.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 1611.6
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1610.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1571.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1558.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1554.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1553.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1553.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 1549.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1548.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 1543.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1541.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 1510.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1496.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 1491.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1490.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1477.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1475.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1468.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1467.4
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1466.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1460.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1451.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 1446.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1423.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 1422.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 1420.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1414.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1408.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1406.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 1400.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 1393.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 1381.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1375.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1371.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1368.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1365.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 1354.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1347.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1346.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1332.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1324.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1317.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1316.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1312.2
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1309.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1284.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1283.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1283.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1281.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1279.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1273.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 1262.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1250.5
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1247.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1247.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1246.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1241.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 1239.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1231.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1224.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 1222.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 1220.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1216.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 1205.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 1195.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 1177.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 1173.1
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1142.1
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 1128.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1122.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1117.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 1115.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1114.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1097.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1090.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1080.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 1079.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1077.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1075.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1071.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1065.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1064.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1056.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1051.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1041.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1038.0
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1035.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1022.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1018.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1004.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 991.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 981.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 971.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 970.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 964.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 960.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 950.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 943.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 938.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 924.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 914.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 904.5
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 898.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 883.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 872.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 871.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 861.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 853.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 850.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 822.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 815.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 813.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 807.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 798.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 791.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 785.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 784.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 783.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 757.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 742.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 728.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 721.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 718.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 715.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 710.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 700.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 684.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 684.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 682.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 668.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 663.3
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 658.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 657.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 652.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 648.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 641.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 639.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 635.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 633.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 624.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 603.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 601.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 600.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 590.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 589.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 582.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 581.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 578.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 576.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 573.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 562.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 555.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 543.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 411.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 391.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 369.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 365.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 332.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 299.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 295.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 294.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 293.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 286.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 263.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 246.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 246.2
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2412.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2332.7
FF:10164-103B2 76 years, female 2332.7
Nucleus accumbens
Scaled Tags Per Million: 1247.4
FF:10037-101F1 23-56 years, mixed 1247.4
Putamen
Scaled Tags Per Million: 2412.3
FF:10176-103C5 60 years, female 2412.3
Globus pallidus
Scaled Tags Per Million: 1181.1
FF:10175-103C4 60 years, female 1427.4
FF:10161-103A8 76 years, female 934.8

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

949.7
Pig sample Sample description nTPM
Caudate
nTPM: 903.3
Samples: 4

Max nTPM: 1067.2
Min nTPM: 762.8
Sample A Female 1067.2
Sample B Female 882.7
Sample C Male 900.3
Sample D Male 762.8
Putamen
nTPM: 845.6
Samples: 4

Max nTPM: 1028.2
Min nTPM: 709.1
Sample A Female 1028.2
Sample B Female 709.1
Sample C Male 870.5
Sample D Male 774.5
Septum
nTPM: 949.7
Samples: 4

Max nTPM: 1081.9
Min nTPM: 847.7
Sample A Female 941.9
Sample B Female 847.7
Sample C Male 1081.9
Sample D Male 927.2
Ventral pallidum
nTPM: 849.3
Samples: 4

Max nTPM: 948.7
Min nTPM: 761.6
Sample A Female 863.4
Sample B Female 823.4
Sample C Male 948.7
Sample D Male 761.6

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1469.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1215.6
Samples: 4

Max nTPM: 1271.1
Min nTPM: 1175.4
Sample A Male 1175.4
Sample B Male 1201.1
Sample C Female 1214.7
Sample D Female 1271.1
Septum
nTPM: 1469.2
Samples: 4

Max nTPM: 1565.2
Min nTPM: 1343.2
Sample A Male 1531.1
Sample B Male 1437.1
Sample C Female 1343.2
Sample D Female 1565.2
Ventral forebrain
nTPM: 1380.7
Samples: 4

Max nTPM: 1544.1
Min nTPM: 1318.9
Sample A Male 1322.4
Sample B Male 1544.1
Sample C Female 1318.9
Sample D Female 1337.2

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.5
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 14.6
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 14.4
Pallidum
Expression energy: 17.9
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 18.8
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 17.0

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