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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:277.0 nTPM
HPA Brain:841.6 nTPM
GTEx:277.0 nTPM
FANTOM5:1981.8 Scaled Tags Per Million
Pig:1378.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

841.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 692.8
1981 Female, age 72, midline 930.9
2048 Male, age 55, midline 912.9
2816 Male, age 47, midline 568.2
2194 Female, age 79, both hemispheres 559.5
2565 Male, age 75, midline 492.3
Cervical spinal cord, dorsal horn
nTPM: 841.6
2721 Male, age 90, both hemispheres 1470.4
2173 Female, age 72, unknown 806.8
2297 Male, age 75, both hemispheres 768.7
2069 Male, age 47, both hemispheres 736.6
1877 Male, age 55, unknown 678.6
2296 Male, age 66, both hemispheres 588.1
Cervical spinal cord, ventral horn
nTPM: 591.7
2098 Female, age 72, unknown 993.4
2295 Male, age 66, both hemispheres 642.2
2809 Male, age 90, both hemispheres 635.4
2068 Male, age 55, unknown 470.3
2480 Male, age 75, both hemispheres 419.7
2820 Female, age 79, both hemispheres 388.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 277.0
Samples: 159

Max nTPM: 1023.3
Min nTPM: 75.9
Std nTPM: 155.1
Median nTPM: 242.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1023.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 742.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 740.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 728.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 712.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 697.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 659.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 632.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 612.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 566.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 563.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 551.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 545.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 486.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 458.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 449.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 447.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 446.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 441.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 435.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 433.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 431.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 414.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 413.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 402.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 393.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 392.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 380.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 373.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 370.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 368.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 367.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 365.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 362.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 362.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 359.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 357.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 356.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 354.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 343.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 336.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 336.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 334.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 332.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 329.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 323.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 320.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 319.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 317.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 315.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 311.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 309.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 304.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 300.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 300.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 295.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 292.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 289.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 287.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 283.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 281.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 273.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 272.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 268.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 267.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 266.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 263.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 261.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 260.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 256.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 253.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 252.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 252.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 251.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 249.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 247.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 247.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 246.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 245.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 242.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 240.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 237.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 231.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 226.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 224.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 224.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 224.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 215.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 215.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 212.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 208.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 208.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 207.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 201.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 200.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 197.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 196.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 193.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 192.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 190.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 190.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 190.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 190.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 187.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 186.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 186.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 185.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 184.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 181.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 180.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 177.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 177.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 175.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 173.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 173.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 172.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 171.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 166.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 166.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 165.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 165.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 161.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 158.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 151.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 151.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 150.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 150.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 148.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 147.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 147.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 146.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 142.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 140.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 139.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 139.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 138.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 137.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 137.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 131.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 126.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 125.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 124.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 123.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 121.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 120.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 108.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 101.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 98.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 92.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 90.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 75.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1981.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1981.8
FF:10159-103A6 76 years, female 2001.5
FF:10181-103D1 60 years, female 1962.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1378.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1014.7
Samples: 4

Max nTPM: 1264.8
Min nTPM: 703.0
Sample A Female 1106.2
Sample B Female 1264.8
Sample C Male 703.0
Sample D Male 984.7
Ventral spinal cord
nTPM: 1378.5
Samples: 4

Max nTPM: 1522.6
Min nTPM: 1081.4
Sample A Female 1522.6
Sample B Female 1499.3
Sample C Male 1081.4
Sample D Male 1410.5

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