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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1448.5 nTPM
HPA Brain:456.4 nTPM
GTEx:1448.5 nTPM
FANTOM5:322.7 Scaled Tags Per Million
Pig:89.1 nTPM
Mouse:409.2 nTPM
Allen mouse:4.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.4
Sample id Sample description nTPM
Amygdala
nTPM: 456.4
2695 Female, age 67, right hemisphere 638.9
2514 Male, age 75, right hemisphere 449.9
2814 Male, age 76, right hemisphere 434.3
1987 Female, age 91, left hemisphere 389.3
2517 Female, age 94, left hemisphere 369.7
Basal amygdala
nTPM: 367.1
2827 Female, age 67, right hemisphere 547.9
2609 Male, age 75, right hemisphere 388.3
2685 Female, age 94, left hemisphere 336.1
2110 Male, age 80, left hemisphere 335.7
1955 Male, age 76, both hemispheres 328.5
2243 Female, age 91, right hemisphere 266.1
Central amygdala
nTPM: 397.8
2826 Female, age 94, left hemisphere 661.4
2515 Male, age 75, right hemisphere 382.4
1905 Male, age 76, both hemispheres 335.0
2239 Male, age 80, left hemisphere 316.0
2701 Female, age 91, right hemisphere 294.4
Corticomedial amygdala
nTPM: 331.0
2428 Male, age 75, right hemisphere 379.0
2535 Female, age 67, right hemisphere 369.7
2240 Male, age 76, both hemispheres 328.6
2429 Female, age 94, left hemisphere 316.2
2829 Male, age 80, left hemisphere 311.4
2242 Female, age 91, right hemisphere 281.2
Lateral amygdala
nTPM: 424.8
2830 Female, age 67, right hemisphere 664.2
2516 Male, age 75, right hemisphere 530.7
2534 Female, age 94, left hemisphere 455.9
2256 Male, age 80, left hemisphere 334.6
1883 Male, age 76, both hemispheres 317.4
2255 Female, age 91, right hemisphere 246.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1448.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1448.5
Samples: 152

Max nTPM: 4550.6
Min nTPM: 618.5
Std nTPM: 632.3
Median nTPM: 1298.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4550.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4076.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3282.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3259.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3199.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3105.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2840.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2711.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2692.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2684.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2565.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2467.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2389.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2195.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2191.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2109.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2100.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2026.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2016.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1983.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1949.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1942.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1939.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1930.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1929.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1926.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1911.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1879.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1827.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1814.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1810.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1770.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1766.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1736.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1718.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1700.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1690.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1689.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1671.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1660.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1625.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1597.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1580.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1568.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1562.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1547.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1545.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1542.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1537.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1529.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1509.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1485.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1474.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1466.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1466.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1466.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1425.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1417.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1414.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1414.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1410.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1404.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1392.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1390.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1388.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1377.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1371.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1354.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1353.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1335.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1321.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1317.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1307.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1305.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1302.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1300.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1295.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1282.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1282.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1272.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1261.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1245.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1241.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1235.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1235.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1226.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1211.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1210.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1200.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1193.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1193.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1182.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1177.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1161.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1155.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1148.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1139.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1133.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1125.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1117.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1114.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1114.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1111.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1100.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1092.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1082.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1075.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1073.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1071.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1071.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1061.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1053.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1035.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1019.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1017.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1017.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1014.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1011.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 998.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 984.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 983.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 980.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 975.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 974.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 970.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 962.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 940.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 938.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 928.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 927.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 927.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 923.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 922.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 918.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 916.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 907.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 889.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 886.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 877.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 851.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 834.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 830.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 796.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 774.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 773.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 768.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 764.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 744.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 712.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 693.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 682.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 618.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

322.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 322.7
FF:10151-102I7 76 years, female 322.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.1
Pig sample Sample description nTPM
Amygdala
nTPM: 89.1
Samples: 4

Max nTPM: 111.7
Min nTPM: 53.8
Sample A Female 109.6
Sample B Female 111.7
Sample C Male 81.2
Sample D Male 53.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

409.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 409.2
Samples: 4

Max nTPM: 439.8
Min nTPM: 386.2
Sample A Male 386.2
Sample B Male 404.1
Sample C Female 439.8
Sample D Female 406.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.8
100143515 Antisense, RP_110407_01_E05, Mouse strain C57BL/6J (56 days, male) 4.8

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