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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1679.6 nTPM
HPA Brain:614.2 nTPM
GTEx:1679.6 nTPM
FANTOM5:498.3 Scaled Tags Per Million
Pig:137.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

614.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 480.5
1981 Female, age 72, midline 626.6
2565 Male, age 75, midline 542.8
2048 Male, age 55, midline 510.3
2816 Male, age 47, midline 380.6
2194 Female, age 79, both hemispheres 342.1
Cervical spinal cord, dorsal horn
nTPM: 537.7
2173 Female, age 72, unknown 702.6
2069 Male, age 47, both hemispheres 657.3
2296 Male, age 66, both hemispheres 607.7
1877 Male, age 55, unknown 536.7
2721 Male, age 90, both hemispheres 392.3
2297 Male, age 75, both hemispheres 329.4
Cervical spinal cord, ventral horn
nTPM: 614.2
2480 Male, age 75, both hemispheres 825.7
2098 Female, age 72, unknown 818.0
2809 Male, age 90, both hemispheres 759.3
2295 Male, age 66, both hemispheres 514.3
2068 Male, age 55, unknown 474.1
2820 Female, age 79, both hemispheres 294.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1679.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1679.6
Samples: 159

Max nTPM: 3199.7
Min nTPM: 594.8
Std nTPM: 530.6
Median nTPM: 1625.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3199.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3153.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2878.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2852.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2842.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2841.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2822.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2765.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2750.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2665.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2604.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2568.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2545.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2535.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2504.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2432.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2386.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2363.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2353.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2352.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2343.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2320.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2315.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2305.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2302.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2288.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2259.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2239.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2233.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2192.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2158.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2136.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2133.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2126.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2108.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2037.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2017.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2015.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1999.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1967.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1957.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1952.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1942.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1908.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1902.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1893.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1883.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1872.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1869.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1862.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1857.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1832.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1826.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1825.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1820.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1791.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1761.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1759.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1756.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1756.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1750.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1749.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1748.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1745.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1735.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1712.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1707.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1691.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1689.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1682.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1681.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1655.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1653.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1651.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1634.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1630.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1630.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1629.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1628.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1625.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1620.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1611.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1603.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1583.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1581.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1565.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1534.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1530.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1529.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1526.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1520.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1505.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1501.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1496.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1486.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1473.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1466.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1460.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1457.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1440.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1433.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1411.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1409.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1404.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1399.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1394.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1381.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1374.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1356.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1336.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1335.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1322.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1313.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1308.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1283.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1276.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1270.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1269.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1268.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1261.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1252.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1251.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1250.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1249.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1248.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1245.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1235.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1231.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1229.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1203.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1203.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1200.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1195.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1195.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1186.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1176.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1140.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1133.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1133.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1132.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1125.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1122.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1120.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1112.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1083.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1080.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1011.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1011.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1011.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 996.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 993.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 965.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 950.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 926.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 886.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 712.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 699.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 672.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 594.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

498.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 498.3
FF:10181-103D1 60 years, female 629.9
FF:10159-103A6 76 years, female 366.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 137.8
Samples: 4

Max nTPM: 206.0
Min nTPM: 83.4
Sample A Female 118.1
Sample B Female 143.8
Sample C Male 206.0
Sample D Male 83.4
Ventral spinal cord
nTPM: 116.3
Samples: 4

Max nTPM: 126.6
Min nTPM: 105.7
Sample A Female 109.6
Sample B Female 126.6
Sample C Male 123.2
Sample D Male 105.7

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