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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:860.5 nTPM
HPA Brain:1225.8 nTPM
GTEx:860.5 nTPM
FANTOM5:1069.2 Scaled Tags Per Million
Pig:1316.5 nTPM
Mouse:1001.6 nTPM
Allen mouse:2.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1225.8
Sample id Sample description nTPM
Amygdala
nTPM: 894.3
2814 Male, age 76, right hemisphere 1206.3
1987 Female, age 91, left hemisphere 974.5
2517 Female, age 94, left hemisphere 957.3
2514 Male, age 75, right hemisphere 725.2
2695 Female, age 67, right hemisphere 608.1
Basal amygdala
nTPM: 1225.8
2243 Female, age 91, right hemisphere 1699.6
2685 Female, age 94, left hemisphere 1427.4
2110 Male, age 80, left hemisphere 1331.9
1955 Male, age 76, both hemispheres 1051.4
2827 Female, age 67, right hemisphere 962.3
2609 Male, age 75, right hemisphere 882.1
Central amygdala
nTPM: 1081.2
2239 Male, age 80, left hemisphere 1288.2
2826 Female, age 94, left hemisphere 1266.9
2701 Female, age 91, right hemisphere 1062.5
1905 Male, age 76, both hemispheres 1050.3
2515 Male, age 75, right hemisphere 738.0
Corticomedial amygdala
nTPM: 1202.0
2242 Female, age 91, right hemisphere 1580.8
2829 Male, age 80, left hemisphere 1549.4
2535 Female, age 67, right hemisphere 1153.3
2429 Female, age 94, left hemisphere 1128.2
2240 Male, age 76, both hemispheres 1035.4
2428 Male, age 75, right hemisphere 765.0
Lateral amygdala
nTPM: 1018.3
2534 Female, age 94, left hemisphere 1396.8
1883 Male, age 76, both hemispheres 1179.9
2255 Female, age 91, right hemisphere 1073.7
2256 Male, age 80, left hemisphere 1045.7
2516 Male, age 75, right hemisphere 710.5
2830 Female, age 67, right hemisphere 703.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

860.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 860.5
Samples: 152

Max nTPM: 2760.9
Min nTPM: 192.1
Std nTPM: 474.7
Median nTPM: 731.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2760.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2686.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2307.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2060.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1908.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1868.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1863.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1759.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1717.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1644.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1607.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1596.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1567.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1536.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1520.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1482.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1477.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1435.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1429.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1403.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1398.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1382.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1378.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1331.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1306.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1294.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1253.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1223.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1221.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1218.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1203.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1167.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1152.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1131.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1130.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1115.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1103.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1096.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1093.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1078.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1059.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1055.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1052.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1047.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1043.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1036.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1032.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1015.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1013.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1010.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 996.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 995.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 992.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 990.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 983.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 973.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 953.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 951.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 941.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 941.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 903.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 883.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 853.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 833.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 801.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 797.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 783.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 780.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 771.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 759.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 749.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 747.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 741.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 741.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 740.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 733.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 728.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 725.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 713.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 707.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 706.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 693.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 681.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 681.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 664.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 661.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 656.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 634.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 626.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 619.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 619.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 616.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 615.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 610.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 596.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 596.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 591.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 585.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 579.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 575.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 573.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 569.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 569.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 567.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 566.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 560.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 548.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 546.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 542.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 535.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 531.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 530.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 523.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 518.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 505.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 504.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 497.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 495.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 494.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 488.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 486.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 485.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 481.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 481.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 480.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 452.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 446.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 438.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 427.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 420.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 416.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 403.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 400.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 387.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 385.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 382.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 377.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 361.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 358.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 351.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 342.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 336.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 334.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 333.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 331.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 322.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 317.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 296.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 282.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 254.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 252.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 192.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1069.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1069.2
FF:10151-102I7 76 years, female 1069.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1316.5
Pig sample Sample description nTPM
Amygdala
nTPM: 1316.6
Samples: 4

Max nTPM: 1904.7
Min nTPM: 941.1
Sample A Female 1904.7
Sample B Female 941.1
Sample C Male 1290.4
Sample D Male 1130.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1001.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1001.7
Samples: 4

Max nTPM: 1113.1
Min nTPM: 937.8
Sample A Male 985.5
Sample B Male 970.2
Sample C Female 1113.1
Sample D Female 937.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 2.7

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