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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:311.2 nTPM
HPA Brain:722.3 nTPM
GTEx:311.2 nTPM
FANTOM5:405.1 Scaled Tags Per Million
Pig:664.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 548.2
2194 Female, age 79, both hemispheres 800.3
1981 Female, age 72, midline 521.5
2565 Male, age 75, midline 502.4
2816 Male, age 47, midline 497.3
2048 Male, age 55, midline 419.8
Cervical spinal cord, dorsal horn
nTPM: 722.3
2297 Male, age 75, both hemispheres 1138.6
2721 Male, age 90, both hemispheres 790.2
1877 Male, age 55, unknown 714.5
2069 Male, age 47, both hemispheres 671.3
2173 Female, age 72, unknown 587.6
2296 Male, age 66, both hemispheres 432.0
Cervical spinal cord, ventral horn
nTPM: 653.0
2820 Female, age 79, both hemispheres 1047.8
2068 Male, age 55, unknown 785.8
2480 Male, age 75, both hemispheres 690.5
2295 Male, age 66, both hemispheres 581.3
2809 Male, age 90, both hemispheres 479.9
2098 Female, age 72, unknown 333.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 311.2
Samples: 159

Max nTPM: 916.2
Min nTPM: 132.2
Std nTPM: 108.0
Median nTPM: 290.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 916.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 831.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 713.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 657.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 575.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 554.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 500.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 463.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 459.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 453.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 452.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 450.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 437.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 431.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 415.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 412.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 411.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 409.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 404.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 394.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 394.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 391.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 389.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 387.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 387.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 383.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 382.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 379.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 377.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 375.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 374.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 370.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 369.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 367.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 367.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 363.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 359.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 356.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 353.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 352.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 351.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 349.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 343.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 342.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 341.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 339.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 338.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 336.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 334.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 334.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 326.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 325.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 325.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 324.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 324.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 321.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 320.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 318.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 318.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 317.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 314.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 313.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 311.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 311.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 310.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 309.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 305.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 305.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 302.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 302.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 300.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 299.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 298.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 298.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 295.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 293.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 292.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 292.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 292.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 290.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 289.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 288.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 288.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 287.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 284.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 284.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 284.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 284.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 283.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 283.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 281.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 278.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 271.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 271.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 270.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 270.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 270.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 267.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 267.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 267.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 266.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 264.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 262.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 261.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 261.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 258.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 257.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 256.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 255.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 254.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 254.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 252.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 252.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 252.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 251.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 248.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 247.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 245.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 245.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 245.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 244.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 244.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 242.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 241.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 238.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 238.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 235.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 231.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 230.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 230.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 230.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 229.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 227.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 225.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 225.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 223.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 222.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 221.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 220.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 219.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 218.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 217.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 216.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 215.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 214.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 212.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 209.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 207.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 204.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 196.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 194.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 189.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 188.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 187.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 176.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 163.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 161.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

405.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 405.1
FF:10181-103D1 60 years, female 592.6
FF:10159-103A6 76 years, female 217.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

664.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 663.7
Samples: 4

Max nTPM: 1001.4
Min nTPM: 376.6
Sample A Female 1001.4
Sample B Female 488.7
Sample C Male 376.6
Sample D Male 788.2
Ventral spinal cord
nTPM: 664.9
Samples: 4

Max nTPM: 765.1
Min nTPM: 598.2
Sample A Female 765.1
Sample B Female 657.3
Sample C Male 638.9
Sample D Male 598.2

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