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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1102.5 nTPM
FANTOM5:345.8 Scaled Tags Per Million
Pig:1367.5 nTPM
Mouse:661.6 nTPM
Allen mouse:1.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1102.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 805.0
2032 Female, age 42, unknown 1021.3
2497 Male, age 66, unknown 777.1
2396 Male, age 61, right hemisphere 616.7
Centromedial thalamic nucleus
nTPM: 851.5
2401 Male, age 76, right hemisphere 1271.7
2279 Female, age 85, left hemisphere 431.3
Habenula
nTPM: 1092.1
1957 Male, age 80, both hemispheres 1315.2
2203 Male, age 61, left hemisphere 1240.3
2276 Male, age 66, unknown 1006.6
2252 Male, age 62, unknown 806.2
Lateral geniculate body
nTPM: 1102.5
2106 Female, age 67, right hemisphere 2153.1
2399 Male, age 61, left hemisphere 1456.6
1953 Male, age 62, unknown 1368.3
2035 Female, age 72, unknown 1246.0
2857 Male, age 74, right hemisphere 796.6
2659 Male, age 66, unknown 654.4
2841 Male, age 80, both hemispheres 608.4
2575 Female, age 94, right hemisphere 536.7
Lateral thalamic nuclei
nTPM: 861.7
1903 Male, age 76, left hemisphere 1075.5
2577 Male, age 74, both hemispheres 914.0
2765 Female, age 67, both hemispheres 903.3
2661 Female, age 72, unknown 772.8
2573 Female, age 94, left hemisphere 642.9
Medial dorsal thalamic nucleus
nTPM: 984.6
1859 Male, age 76, both hemispheres 1309.5
2498 Male, age 66, unknown 1298.2
2283 Male, age 80, right hemisphere 1237.4
1810 Male, age 48, unknown 1117.1
1971 Male, age 61, right hemisphere 1098.9
2026 Male, age 62, unknown 1024.3
2492 Male, age 75, right hemisphere 925.3
2576 Male, age 74, both hemispheres 890.8
2402 Female, age 67, both hemispheres 861.5
1930 Female, age 42, unknown 820.2
2572 Female, age 94, right hemisphere 780.7
2660 Female, age 72, unknown 733.9
2039 Female, age 72, unknown 702.4
Medial geniculate body
nTPM: 826.1
1811 Female, age 42, unknown 1220.3
2207 Male, age 80, right hemisphere 947.6
2650 Female, age 94, left hemisphere 815.3
2657 Male, age 74, right hemisphere 755.1
2571 Male, age 75, right hemisphere 731.1
2217 Female, age 72, unknown 712.4
2049 Male, age 76, both hemispheres 600.9
Nucleus reuniens
nTPM: 727.0
2212 Female, age 67, left hemisphere 1079.3
2205 Male, age 80, left hemisphere 682.6
2210 Female, age 85, left hemisphere 419.1
Nucleus rhomboideus
nTPM: 788.4
2206 Male, age 80, both hemispheres 1327.5
2213 Female, age 67, left hemisphere 529.6
2280 Female, age 85, left hemisphere 508.0
Posterior thalamic nucleus
nTPM: 871.5
2266 Male, age 76, right hemisphere 1170.4
2655 Male, age 74, right hemisphere 865.2
2495 Female, age 67, right hemisphere 760.9
2649 Female, age 94, both hemispheres 689.6
Pulvinar
nTPM: 1082.8
2398 Male, age 61, left hemisphere 1386.6
1972 Male, age 62, unknown 1306.1
1932 Male, age 80, right hemisphere 1249.2
2496 Female, age 67, right hemisphere 1236.4
2214 Male, age 76, right hemisphere 1051.4
2582 Female, age 72, unknown 975.2
1929 Male, age 48, unknown 972.2
1899 Female, age 42, unknown 956.3
2724 Male, age 74, right hemisphere 912.7
2499 Male, age 66, unknown 782.1
Subthalamic nucleus
nTPM: 704.0
2275 Male, age 66, unknown 910.3
2406 Female, age 72, unknown 833.1
2658 Male, age 74, both hemispheres 812.8
2124 Male, age 62, unknown 723.5
2282 Male, age 61, both hemispheres 709.2
2779 Female, age 42, unknown 657.2
2216 Male, age 48, unknown 503.7
2056 Female, age 72, unknown 481.7
Ventral posterolateral thalamic nucleus
nTPM: 1080.3
2740 Male, age 76, right hemisphere 1483.4
2397 Male, age 61, right hemisphere 1223.7
2197 Male, age 80, both hemispheres 1111.4
2578 Male, age 74, both hemispheres 1072.3
2581 Female, age 72, unknown 862.0
2570 Male, age 75, right hemisphere 728.9
Ventral posteromedial thalamic nucleus
nTPM: 1005.8
2202 Male, age 61, left hemisphere 1298.0
2758 Male, age 80, both hemispheres 1227.1
2653 Male, age 74, both hemispheres 1017.0
2281 Male, age 75, right hemisphere 778.5
2127 Male, age 76, right hemisphere 708.4
Ventral thalamic nuclei
nTPM: 891.0
1860 Male, age 76, both hemispheres 1264.4
1845 Male, age 48, unknown 1122.9
2858 Female, age 72, unknown 970.0
2285 Male, age 62, unknown 951.2
1912 Female, age 42, unknown 915.3
2204 Male, age 80, both hemispheres 818.0
2652 Male, age 74, left hemisphere 689.2
2580 Male, age 66, unknown 664.6
2291 Female, age 72, unknown 623.6
Zona incerta
nTPM: 702.0
2208 Male, age 80, right hemisphere 873.9
2663 Female, age 72, unknown 731.9
2822 Male, age 74, right hemisphere 708.9
2215 Male, age 66, unknown 665.2
2403 Male, age 62, unknown 529.9

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

345.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 345.8
FF:10154-103A1 76 years, female 345.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1367.5
Pig sample Sample description nTPM
Thalamus
nTPM: 1367.5
Samples: 4

Max nTPM: 1984.0
Min nTPM: 778.9
Sample A Female 1984.0
Sample B Female 1234.4
Sample C Male 1472.6
Sample D Male 778.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

661.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 661.6
Samples: 4

Max nTPM: 683.5
Min nTPM: 647.1
Sample A Male 647.1
Sample B Male 661.6
Sample C Female 683.5
Sample D Female 654.2

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.6
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 1.6

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