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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:147.3 nTPM
GTEx:147.3 nTPM
FANTOM5:299.9 Scaled Tags Per Million
Pig:265.7 nTPM
Mouse:381.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 147.3
Samples: 105

Max nTPM: 242.6
Min nTPM: 53.5
Std nTPM: 39.2
Median nTPM:
452_1 88 years, female 242.6
177_1 74 years, male 233.2
321_1 62 years, female 227.6
377_1 82 years, female 220.6
243_1 75 years, male 220.2
172_1 72 years, female 209.7
386_1 76 years, male 208.4
229_1 69 years, female 205.9
506_1 65 years, male 205.3
163_1 78 years, male 204.5
404_1 82 years, female 202.3
379_1 60 years, male 194.0
353_1 82 years, female 191.9
447_1 81 years, male 191.1
173_1 67 years, male 190.4
376_1 75 years, female 190.0
322_1 76 years, male 189.2
335_1 73 years, female 184.9
316_1 62 years, male 183.7
425_1 59 years, female 179.3
288_1 66 years, female 178.8
295_1 61 years, female 177.3
396_1 62 years, male 176.3
292_1 71 years, male 176.1
320_1 89 years, female 176.1
251_1 78 years, male 173.2
291_1 76 years, male 171.1
348_1 84 years, male 170.7
317_1 60 years, male 170.3
324_1 76 years, male 165.5
318_1 68 years, male 165.1
349_1 83 years, male 163.6
6_1 73 years, female 163.4
351_1 91 years, male 163.3
517_1 88 years, male 162.3
352_1 62 years, male 160.5
293_1 68 years, female 160.2
189_1 76 years, male 160.0
480_1 63 years, male 159.9
254_1 77 years, female 159.5
17_1 71 years, male 157.5
350_1 84 years, female 156.3
406_1 79 years, male 156.2
264_1 73 years, female 154.9
319_1 81 years, male 154.4
347_1 72 years, male 154.0
354_1 81 years, female 151.9
115_1 83 years, male 151.4
413_1 59 years, female 149.0
518_1 75 years, female 147.0
265_1 87 years, male 146.1
468_1 89 years, male 145.2
355_1 70 years, female 144.9
2_1 77 years, female 144.1
120_1 70 years, female 143.8
356_1 87 years, female 143.2
526_1 61 years, male 143.1
145_1 84 years, male 143.0
237_1 82 years, male 142.2
18_1 88 years, male 141.5
286_1 68 years, female 140.9
315_1 62 years, female 140.5
375_1 74 years, female 140.3
246_1 77 years, male 140.0
99_1 64 years, male 138.9
405_1 91 years, male 137.5
41_1 94 years, female 137.3
313_1 79 years, female 137.3
218_1 71 years, female 135.7
314_1 67 years, male 134.9
384_1 83 years, male 134.7
109_1 81 years, female 133.0
4_1 88 years, female 131.4
503_1 68 years, male 129.7
9_1 66 years, female 128.7
499_1 55 years, female 128.7
153_1 70 years, female 127.4
394_1 75 years, female 126.3
266_1 85 years, male 125.9
142_1 61 years, female 125.4
139_1 64 years, female 124.9
126_1 63 years, male 124.1
81_1 67 years, male 121.1
311_1 78 years, male 118.0
137_1 83 years, male 117.3
501_1 88 years, male 114.5
389_1 86 years, female 112.2
117_1 61 years, male 110.0
217_1 76 years, male 109.4
35_1 74 years, female 106.9
162_1 79 years, female 104.0
307_1 66 years, female 104.0
43_1 64 years, female 103.3
466_1 57 years, female 100.9
42_1 85 years, male 95.0
32_1 67 years, male 91.0
119_1 70 years, female 89.8
415_1 77 years, female 87.4
149_1 88 years, male 80.4
414_1 84 years, female 80.2
89_1 63 years, male 67.2
495_1 57 years, female 62.0
490_1 67 years, female 60.9
491_1 89 years, female 54.4
308_1 70 years, female 53.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

299.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 299.9
FF:10030-101E3 24-65 years, mixed 299.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.7
Pig sample Sample description nTPM
Retina
nTPM: 265.7
Samples: 4

Max nTPM: 290.6
Min nTPM: 240.8
Sample A Female 249.7
Sample B Female 290.6
Sample C Male 281.7
Sample D Male 240.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

381.8
Mouse sample Sample description nTPM
Retina
nTPM: 381.8
Samples: 4

Max nTPM: 413.8
Min nTPM: 351.7
Sample A Male 408.8
Sample B Male 353.0
Sample C Female 413.8
Sample D Female 351.7

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