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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:591.3 nTPM
HPA Brain:232.6 nTPM
GTEx:591.3 nTPM
FANTOM5:141.0 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:624.0 nTPM
Allen mouse:13.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.6
Sample id Sample description nTPM
Amygdala
nTPM: 227.8
2695 Female, age 67, right hemisphere 251.4
2514 Male, age 75, right hemisphere 248.4
2517 Female, age 94, left hemisphere 227.9
1987 Female, age 91, left hemisphere 224.1
2814 Male, age 76, right hemisphere 187.3
Basal amygdala
nTPM: 181.0
2827 Female, age 67, right hemisphere 240.2
2609 Male, age 75, right hemisphere 192.4
2110 Male, age 80, left hemisphere 189.5
2243 Female, age 91, right hemisphere 161.9
1955 Male, age 76, both hemispheres 151.3
2685 Female, age 94, left hemisphere 150.7
Central amygdala
nTPM: 216.2
2826 Female, age 94, left hemisphere 317.7
2515 Male, age 75, right hemisphere 254.1
1905 Male, age 76, both hemispheres 192.7
2239 Male, age 80, left hemisphere 180.6
2701 Female, age 91, right hemisphere 135.7
Corticomedial amygdala
nTPM: 177.5
2535 Female, age 67, right hemisphere 213.7
2428 Male, age 75, right hemisphere 209.9
2242 Female, age 91, right hemisphere 176.1
2829 Male, age 80, left hemisphere 168.6
2429 Female, age 94, left hemisphere 159.4
2240 Male, age 76, both hemispheres 137.3
Lateral amygdala
nTPM: 232.6
2830 Female, age 67, right hemisphere 320.0
2516 Male, age 75, right hemisphere 266.7
2534 Female, age 94, left hemisphere 261.7
2256 Male, age 80, left hemisphere 202.2
2255 Female, age 91, right hemisphere 173.5
1883 Male, age 76, both hemispheres 171.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

591.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 591.3
Samples: 152

Max nTPM: 1466.9
Min nTPM: 246.1
Std nTPM: 200.4
Median nTPM: 556.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1466.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1194.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1185.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1153.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1107.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1070.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1048.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1014.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 979.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 958.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 938.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 879.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 875.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 865.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 857.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 844.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 810.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 809.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 800.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 787.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 783.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 779.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 775.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 752.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 752.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 752.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 737.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 735.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 729.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 718.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 714.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 712.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 695.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 695.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 692.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 685.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 682.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 676.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 676.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 673.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 669.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 660.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 653.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 652.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 647.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 635.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 634.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 633.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 625.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 622.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 619.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 618.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 616.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 614.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 612.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 611.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 605.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 603.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 597.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 596.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 596.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 596.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 596.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 595.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 594.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 593.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 586.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 582.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 573.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 569.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 566.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 565.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 563.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 563.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 562.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 558.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 554.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 553.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 545.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 540.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 538.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 538.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 533.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 532.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 532.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 531.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 530.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 529.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 529.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 526.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 526.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 526.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 524.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 518.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 517.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 514.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 513.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 512.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 509.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 506.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 504.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 498.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 496.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 496.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 494.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 487.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 484.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 481.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 481.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 480.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 472.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 472.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 469.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 465.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 459.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 456.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 455.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 450.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 449.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 445.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 442.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 438.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 436.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 435.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 431.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 426.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 420.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 420.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 419.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 415.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 412.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 403.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 400.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 399.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 398.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 395.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 380.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 376.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 375.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 371.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 357.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 348.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 346.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 338.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 327.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 319.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 281.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 275.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 266.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 265.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 251.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 246.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 141.0
FF:10151-102I7 76 years, female 141.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Amygdala
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.3
Sample D Male 0.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

624.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 624.1
Samples: 4

Max nTPM: 686.2
Min nTPM: 597.2
Sample A Male 607.4
Sample B Male 597.2
Sample C Female 686.2
Sample D Female 605.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.6
69818338 Antisense, RP_050510_04_H06, Mouse strain C57BL/6J (56 days, male) 13.6
74749928 Antisense, RP_060220_04_F02, Mouse strain C57BL/6J (56 days, male) 13.5

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