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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:550.6 nTPM
HPA Brain:293.6 nTPM
GTEx:550.6 nTPM
FANTOM5:189.6 Scaled Tags Per Million
Pig:0.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 230.5
2565 Male, age 75, midline 297.0
1981 Female, age 72, midline 287.9
2194 Female, age 79, both hemispheres 216.1
2816 Male, age 47, midline 176.3
2048 Male, age 55, midline 175.4
Cervical spinal cord, dorsal horn
nTPM: 237.8
2069 Male, age 47, both hemispheres 316.0
2173 Female, age 72, unknown 292.3
2296 Male, age 66, both hemispheres 260.4
1877 Male, age 55, unknown 222.2
2297 Male, age 75, both hemispheres 173.2
2721 Male, age 90, both hemispheres 162.7
Cervical spinal cord, ventral horn
nTPM: 293.6
2480 Male, age 75, both hemispheres 380.6
2809 Male, age 90, both hemispheres 367.4
2098 Female, age 72, unknown 349.8
2068 Male, age 55, unknown 261.2
2295 Male, age 66, both hemispheres 260.4
2820 Female, age 79, both hemispheres 142.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

550.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 550.6
Samples: 159

Max nTPM: 1099.3
Min nTPM: 263.5
Std nTPM: 146.7
Median nTPM: 535.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1099.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 967.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 925.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 882.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 871.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 844.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 826.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 817.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 814.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 794.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 792.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 755.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 753.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 740.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 738.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 737.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 735.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 729.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 723.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 719.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 712.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 712.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 708.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 706.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 701.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 699.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 698.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 695.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 691.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 680.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 678.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 676.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 675.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 673.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 672.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 671.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 668.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 662.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 656.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 655.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 655.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 644.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 635.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 630.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 628.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 627.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 619.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 618.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 615.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 611.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 605.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 601.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 595.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 593.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 588.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 587.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 586.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 583.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 578.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 577.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 573.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 572.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 571.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 566.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 564.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 558.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 558.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 557.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 554.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 553.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 553.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 551.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 550.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 549.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 548.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 548.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 544.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 537.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 536.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 535.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 534.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 533.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 529.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 528.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 526.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 524.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 521.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 519.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 518.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 516.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 516.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 510.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 505.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 495.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 491.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 491.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 487.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 486.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 482.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 481.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 479.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 478.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 475.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 475.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 474.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 472.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 470.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 470.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 469.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 466.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 465.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 464.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 461.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 457.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 451.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 450.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 449.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 448.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 447.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 440.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 439.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 439.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 434.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 433.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 433.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 430.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 426.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 423.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 422.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 422.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 421.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 419.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 412.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 411.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 411.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 410.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 406.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 400.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 396.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 391.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 387.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 383.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 373.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 372.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 371.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 371.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 371.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 360.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 357.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 354.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 345.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 337.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 327.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 312.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 309.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 295.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 289.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 274.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 263.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

189.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 189.6
FF:10181-103D1 60 years, female 237.5
FF:10159-103A6 76 years, female 141.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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