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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1966.3 nTPM
HPA Brain:1107.1 nTPM
GTEx:1966.3 nTPM
FANTOM5:1318.0 Scaled Tags Per Million
Pig:420.5 nTPM
Mouse:932.0 nTPM
Allen mouse:11.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1107.1
Sample id Sample description nTPM
Amygdala
nTPM: 1107.1
2695 Female, age 67, right hemisphere 1432.6
2514 Male, age 75, right hemisphere 1183.9
2814 Male, age 76, right hemisphere 1046.1
1987 Female, age 91, left hemisphere 990.2
2517 Female, age 94, left hemisphere 882.8
Basal amygdala
nTPM: 993.5
2609 Male, age 75, right hemisphere 1581.0
2243 Female, age 91, right hemisphere 978.8
2827 Female, age 67, right hemisphere 901.9
2110 Male, age 80, left hemisphere 869.8
1955 Male, age 76, both hemispheres 863.3
2685 Female, age 94, left hemisphere 766.1
Central amygdala
nTPM: 1042.7
2515 Male, age 75, right hemisphere 1260.2
2826 Female, age 94, left hemisphere 1065.1
1905 Male, age 76, both hemispheres 1037.1
2701 Female, age 91, right hemisphere 938.2
2239 Male, age 80, left hemisphere 913.1
Corticomedial amygdala
nTPM: 917.6
2428 Male, age 75, right hemisphere 1316.5
2829 Male, age 80, left hemisphere 960.7
2429 Female, age 94, left hemisphere 848.5
2242 Female, age 91, right hemisphere 837.2
2535 Female, age 67, right hemisphere 779.0
2240 Male, age 76, both hemispheres 763.7
Lateral amygdala
nTPM: 1060.5
2516 Male, age 75, right hemisphere 1605.0
2830 Female, age 67, right hemisphere 1058.4
2256 Male, age 80, left hemisphere 981.2
1883 Male, age 76, both hemispheres 953.3
2255 Female, age 91, right hemisphere 939.8
2534 Female, age 94, left hemisphere 825.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1966.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1966.3
Samples: 152

Max nTPM: 4141.5
Min nTPM: 51.1
Std nTPM: 685.6
Median nTPM: 1870.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4141.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3654.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3578.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3555.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3297.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3271.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 3252.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3238.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 3123.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3112.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3079.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3053.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3052.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 3038.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3013.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2992.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2954.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2830.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2809.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2759.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2742.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2693.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2619.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2582.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2526.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2526.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2503.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2485.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2484.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2470.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2452.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2439.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2435.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2430.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2418.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2417.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2410.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2373.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2366.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2365.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2359.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2333.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2313.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2310.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2306.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2290.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2279.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2274.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2267.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2249.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2248.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2248.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2240.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2237.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2202.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2188.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2183.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2180.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2178.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2139.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2130.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2129.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2129.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2126.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2118.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2089.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2060.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2048.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2004.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2001.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1922.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1913.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1898.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1892.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1891.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1876.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1864.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1857.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1830.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1824.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1801.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1799.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1799.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1794.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1793.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1789.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1780.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1779.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1764.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1751.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1745.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1745.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1722.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1722.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1708.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1706.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1705.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1694.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1693.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1689.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1679.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1641.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1629.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1629.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1623.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1595.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1591.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1571.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1571.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1557.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1542.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1538.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1517.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1505.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1504.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1496.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1475.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1464.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1404.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1404.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1375.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1352.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1347.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1347.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1341.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1317.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1304.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1287.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1266.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1259.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1246.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1241.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1197.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1182.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1174.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1162.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1149.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1121.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1090.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1089.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1046.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1037.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1016.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1008.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1007.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 976.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 965.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 757.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 740.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 647.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 631.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1318.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1318.0
FF:10151-102I7 76 years, female 1318.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

420.5
Pig sample Sample description nTPM
Amygdala
nTPM: 420.5
Samples: 4

Max nTPM: 482.8
Min nTPM: 329.0
Sample A Female 482.8
Sample B Female 458.5
Sample C Male 411.8
Sample D Male 329.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

932.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 931.9
Samples: 4

Max nTPM: 1123.9
Min nTPM: 797.1
Sample A Male 797.1
Sample B Male 838.9
Sample C Female 1123.9
Sample D Female 967.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.2
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 12.5
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 9.9
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 8.3
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 6.0

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