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BRAIN BASAL GANGLIA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1998.2 nTPM
HPA Brain:1655.9 nTPM
GTEx:1998.2 nTPM
FANTOM5:1777.9 Scaled Tags Per Million
Pig:519.4 nTPM
Mouse:962.7 nTPM
Allen mouse:12.4 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002896Antibody HPA003590Antibody CAB017491
Glial cells MediumHighMedium
Neuronal cells Not detectedLowNot detected






BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1655.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 940.5
2481 Female, age 94, left hemisphere 1138.7
1857 Female, age 85, left hemisphere 1053.4
2288 Male, age 75, left hemisphere 1025.8
1854 Male, age 80, left hemisphere 978.9
2290 Female, age 72, unknown 932.0
2289 Male, age 61, right hemisphere 906.2
1781 Male, age 74, unknown 752.9
2846 Female, age 79, unknown 735.9
Globus pallidus, externus
nTPM: 1655.9
2646 Male, age 61, right hemisphere 2749.1
1996 Male, age 80, right hemisphere 1862.7
2772 Female, age 79, unknown 1404.7
2567 Female, age 72, unknown 1286.1
2395 Male, age 75, both hemispheres 976.7
Globus pallidus, internus
nTPM: 1273.4
2483 Female, age 94, right hemisphere 1578.2
2037 Male, age 80, right hemisphere 1506.8
1818 Male, age 74, unknown 1434.7
2287 Male, age 75, right hemisphere 1290.5
2566 Female, age 72, unknown 1062.8
2778 Female, age 91, both hemispheres 1051.7
2111 Female, age 85, right hemisphere 989.0
Nucleus accumbens
nTPM: 907.4
1806 Female, age 85, left hemisphere 1008.7
2824 Male, age 61, right hemisphere 1005.4
2286 Male, age 75, left hemisphere 1001.9
2391 Female, age 94, left hemisphere 910.9
2698 Female, age 72, unknown 908.2
2732 Male, age 80, right hemisphere 894.9
1783 Male, age 74, unknown 841.8
1856 Female, age 91, right hemisphere 687.6
Nucleus basalis of Meynert
nTPM: 1378.5
2569 Male, age 61, both hemispheres 2988.4
2484 Female, age 94, left hemisphere 942.2
2393 Male, age 80, right hemisphere 809.5
2821 Male, age 75, both hemispheres 773.9
Nucleus of the diagonal band
nTPM: 651.6
1979 Male, age 74, unknown 816.2
1812 Female, age 91, both hemispheres 654.6
2195 Female, age 85, both hemispheres 648.6
2775 Male, age 80, right hemisphere 571.9
2029 Male, age 61, right hemisphere 566.6
Putamen
nTPM: 846.7
2647 Male, age 75, left hemisphere 1159.5
2482 Female, age 94, left hemisphere 970.2
2489 Female, age 72, unknown 902.7
1937 Female, age 91, right hemisphere 751.9
1829 Male, age 74, unknown 751.7
2466 Female, age 79, unknown 734.1
1838 Male, age 80, right hemisphere 656.6
Septal nuclei
nTPM: 748.2
2059 Female, age 85, both hemispheres 1011.4
2199 Male, age 80, right hemisphere 1008.6
2394 Male, age 61, left hemisphere 933.4
1960 Male, age 74, unknown 620.2
2009 Female, age 91, both hemispheres 599.5
2031 Female, age 72, unknown 550.5
2629 Female, age 94, right hemisphere 513.6
Stria terminalis, bed nucleus
nTPM: 635.8
2201 Male, age 74, unknown 891.9
1974 Female, age 91, both hemispheres 563.9
2486 Female, age 94, both hemispheres 451.6

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1998.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1676.1
Samples: 246

Max nTPM: 3904.7
Min nTPM: 214.3
Std nTPM: 647.8
Median nTPM: 1542.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 3904.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3625.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3551.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3520.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3330.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3306.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 3221.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 3063.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3031.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2952.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2907.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2904.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2846.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2846.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2818.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2803.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2800.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2749.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2715.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2701.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2675.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2655.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2645.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2617.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2605.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2585.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 2527.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2523.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2520.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2503.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2501.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2496.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2455.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 2421.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 2411.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2405.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2378.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2356.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 2351.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2343.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2338.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 2335.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 2328.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2300.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 2288.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 2276.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2275.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 2246.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2244.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2222.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2203.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2168.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2155.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 2138.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2118.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2106.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2077.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2072.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2070.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 2069.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2068.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2041.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2028.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 2018.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 2007.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2001.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1996.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1992.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1989.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1988.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1974.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1939.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1929.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1919.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1907.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1899.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1897.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1888.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1845.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1843.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1836.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1814.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1812.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1804.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1802.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1797.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1787.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1772.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1755.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1753.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1734.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1728.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1727.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1726.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1723.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1719.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1718.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1709.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1706.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1693.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1686.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1678.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1674.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1673.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1671.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1670.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1668.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1653.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1653.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1643.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1640.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1637.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1629.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1628.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1615.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1614.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1613.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1609.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1604.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1569.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1566.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1547.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1543.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1540.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1537.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1536.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1532.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1531.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1528.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1524.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1523.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1520.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1520.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1517.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1516.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1514.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1511.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1499.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1486.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1481.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1476.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1475.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1469.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1467.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1463.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1462.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1441.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1437.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1411.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1409.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1406.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1400.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1400.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1399.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1394.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1388.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1387.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1384.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1378.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1376.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1375.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1374.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1374.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1366.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1333.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1333.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1328.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1323.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1320.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1319.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1311.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1306.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1305.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1303.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1297.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1296.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1286.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1281.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1266.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1264.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1264.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1239.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1233.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1229.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1217.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1214.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1210.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1185.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1184.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1182.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1169.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1165.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1161.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1157.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1151.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1151.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1145.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1143.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1140.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1140.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1119.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1117.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1116.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1088.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1074.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1064.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1060.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1035.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1025.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1023.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1018.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1015.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1011.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1011.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 996.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 995.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 989.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 987.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 985.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 980.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 979.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 979.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 975.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 968.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 967.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 953.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 936.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 906.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 891.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 877.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 850.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 837.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 823.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 810.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 766.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 746.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 740.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 717.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 710.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 705.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 655.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 625.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 443.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 413.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 377.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 214.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1537.9
Samples: 246

Max nTPM: 3649.5
Min nTPM: 135.6
Std nTPM: 659.7
Median nTPM: 1367.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 3649.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 3613.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 3364.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 3298.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 3261.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 3181.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 3109.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 2979.4
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 2933.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 2880.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 2852.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 2828.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 2804.6
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 2766.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 2741.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 2719.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 2696.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 2696.4
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 2681.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 2653.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 2652.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 2652.5
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 2581.9
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 2579.6
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 2529.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 2522.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 2496.0
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 2469.8
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 2443.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 2443.5
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 2415.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 2404.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 2389.1
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 2382.4
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 2381.2
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 2380.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 2370.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 2320.0
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 2319.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 2292.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 2284.7
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 2253.1
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 2223.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 2221.9
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 2207.1
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 2149.8
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 2115.9
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 2087.3
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 2076.1
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 2062.9
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 2051.9
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 2034.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 2020.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 2010.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 1997.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 1996.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 1988.6
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 1981.2
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 1970.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 1967.4
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 1950.2
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 1938.6
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1904.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 1904.3
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 1902.5
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 1889.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 1851.2
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1847.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1813.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 1804.2
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 1773.6
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 1765.9
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 1724.7
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1719.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1710.4
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 1706.2
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1703.2
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1692.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 1687.7
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 1686.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 1680.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 1664.3
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 1652.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 1650.9
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 1639.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 1638.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 1637.3
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 1632.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 1619.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 1602.8
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1594.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 1589.4
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 1563.1
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 1561.2
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 1559.8
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1554.7
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1550.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 1543.7
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 1533.3
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 1521.6
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 1518.0
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 1513.1
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1506.6
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 1505.2
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1502.6
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 1501.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1499.8
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1493.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 1474.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 1458.6
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 1454.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 1445.4
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1438.7
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 1431.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 1431.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 1423.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1414.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 1401.8
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 1389.9
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1382.5
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 1378.5
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 1375.4
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 1368.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 1365.6
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 1357.1
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1353.7
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1352.4
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 1347.1
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 1343.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 1342.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1337.2
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 1335.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1334.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 1331.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 1315.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 1305.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 1290.3
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 1289.9
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 1276.9
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1276.0
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 1265.8
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1250.1
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 1245.4
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1242.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1237.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 1234.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 1232.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 1232.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 1228.1
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 1221.7
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 1217.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 1217.2
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 1215.1
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 1212.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1210.2
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 1202.1
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1200.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1190.9
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 1185.5
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1179.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1178.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1174.9
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 1172.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1152.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 1148.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 1144.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 1144.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 1141.2
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 1139.1
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 1138.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 1137.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 1135.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 1134.5
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 1127.7
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 1124.1
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1122.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 1120.4
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 1113.5
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 1110.5
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 1107.1
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 1105.3
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 1084.6
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 1079.3
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 1079.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 1072.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1070.2
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 1061.6
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 1051.0
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1047.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1037.7
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 1036.7
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1026.7
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 1025.7
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 1014.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 1010.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 1005.1
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 997.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 982.3
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 981.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 976.1
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 972.6
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 972.2
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 966.5
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 962.8
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 934.0
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 930.9
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 924.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 917.0
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 912.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 897.4
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 896.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 896.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 892.8
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 886.9
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 886.7
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 875.8
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 868.3
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 868.0
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 854.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 851.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 849.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 844.1
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 842.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 842.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 837.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 822.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 818.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 812.4
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 779.6
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 773.1
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 755.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 755.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 754.9
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 750.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 717.4
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 707.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 698.6
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 627.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 608.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 590.2
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 546.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 543.8
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 536.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 500.9
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 492.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 135.6
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Brain - Putamen (basal ganglia)
Average nTPM: 1998.2
Samples: 205

Max nTPM: 4500.9
Min nTPM: 624.4
Std nTPM: 806.6
Median nTPM: 1880.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 4500.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 4382.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 4189.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 4089.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4032.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 3821.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3785.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 3751.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 3581.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 3578.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 3499.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 3491.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 3488.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 3457.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 3452.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 3275.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 3267.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 3248.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 3202.4
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 3190.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 3165.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 3074.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 3040.8
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 3006.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 2973.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 2952.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 2942.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 2913.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 2912.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 2901.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 2884.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 2872.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 2852.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 2818.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 2778.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 2764.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2743.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 2727.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 2693.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2662.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 2572.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 2555.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 2552.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 2547.6
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 2546.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 2534.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 2523.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 2521.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 2517.9
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2485.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 2443.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 2438.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 2436.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 2424.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 2400.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 2382.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 2368.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 2338.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 2337.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 2334.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 2325.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2318.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 2313.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 2309.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 2302.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 2280.3
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 2273.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 2269.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 2258.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 2253.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 2241.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 2192.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 2188.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 2187.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 2181.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 2167.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 2165.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 2151.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2145.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 2140.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 2139.6
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 2115.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 2113.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 2105.8
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 2062.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 2052.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 2052.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 2043.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 2031.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 2011.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1994.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1994.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 1985.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 1979.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1972.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1967.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1941.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1917.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1917.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1914.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1911.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1883.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1880.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1880.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 1869.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1862.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1842.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 1831.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1825.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1819.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1818.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1794.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1781.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1775.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1762.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1759.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1753.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 1751.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1734.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1729.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 1709.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 1692.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1671.5
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 1661.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1645.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1638.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1633.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 1628.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 1626.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1621.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1618.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1611.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 1608.5
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1604.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1600.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1593.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1593.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1592.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1584.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1566.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 1562.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 1539.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1532.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 1526.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1518.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 1511.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 1503.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1500.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1486.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1480.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 1477.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1440.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 1403.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1400.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 1399.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1394.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 1390.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1364.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1357.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1351.6
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1336.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1335.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1322.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 1315.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1314.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 1305.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 1297.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 1251.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1230.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1172.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1172.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1170.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1168.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1152.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 1136.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 1135.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1124.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1119.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1101.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1097.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1092.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1091.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 1064.2
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 1056.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1047.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1008.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 1007.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1005.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 977.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 947.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 923.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 921.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 899.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 893.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 869.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 845.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 822.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 787.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 786.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 771.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 731.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 704.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 701.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 669.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 624.4
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1777.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 878.1
FF:10164-103B2 76 years, female 878.1
Nucleus accumbens
Scaled Tags Per Million: 1046.1
FF:10037-101F1 23-56 years, mixed 1046.1
Putamen
Scaled Tags Per Million: 1085.3
FF:10176-103C5 60 years, female 1085.3
Globus pallidus
Scaled Tags Per Million: 1777.9
FF:10175-103C4 60 years, female 2381.7
FF:10161-103A8 76 years, female 1174.0

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

519.4
Pig sample Sample description nTPM
Caudate
nTPM: 359.3
Samples: 4

Max nTPM: 411.4
Min nTPM: 302.0
Sample A Female 331.5
Sample B Female 392.2
Sample C Male 411.4
Sample D Male 302.0
Putamen
nTPM: 519.5
Samples: 4

Max nTPM: 744.1
Min nTPM: 364.9
Sample A Female 744.1
Sample B Female 364.9
Sample C Male 571.5
Sample D Male 397.3
Septum
nTPM: 474.2
Samples: 4

Max nTPM: 557.1
Min nTPM: 403.5
Sample A Female 437.8
Sample B Female 403.5
Sample C Male 557.1
Sample D Male 498.3
Ventral pallidum
nTPM: 434.8
Samples: 4

Max nTPM: 614.1
Min nTPM: 304.8
Sample A Female 316.0
Sample B Female 504.3
Sample C Male 614.1
Sample D Male 304.8

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

962.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 940.7
Samples: 4

Max nTPM: 992.5
Min nTPM: 877.3
Sample A Male 903.9
Sample B Male 989.2
Sample C Female 877.3
Sample D Female 992.5
Septum
nTPM: 962.7
Samples: 4

Max nTPM: 999.6
Min nTPM: 911.2
Sample A Male 911.2
Sample B Male 996.7
Sample C Female 943.4
Sample D Female 999.6
Ventral forebrain
nTPM: 852.0
Samples: 4

Max nTPM: 964.9
Min nTPM: 744.0
Sample A Male 744.0
Sample B Male 964.9
Sample C Female 918.7
Sample D Female 780.4

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.2
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 14.3
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 8.8
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 8.1
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 4.1
Pallidum
Expression energy: 12.4
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 15.0
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 10.2
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 9.8
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 6.4

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