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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1427.5 nTPM
FANTOM5:1218.5 Scaled Tags Per Million
Pig:868.5 nTPM
Mouse:1507.9 nTPM
Allen mouse:14.1 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1427.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 694.2
2497 Male, age 66, unknown 1039.0
2032 Female, age 42, unknown 828.3
2396 Male, age 61, right hemisphere 215.2
Centromedial thalamic nucleus
nTPM: 973.3
2279 Female, age 85, left hemisphere 1003.4
2401 Male, age 76, right hemisphere 943.2
Habenula
nTPM: 984.0
2276 Male, age 66, unknown 1050.3
1957 Male, age 80, both hemispheres 1037.2
2252 Male, age 62, unknown 984.1
2203 Male, age 61, left hemisphere 864.5
Lateral geniculate body
nTPM: 1102.0
2857 Male, age 74, right hemisphere 1612.0
2399 Male, age 61, left hemisphere 1452.0
2575 Female, age 94, right hemisphere 1172.0
2659 Male, age 66, unknown 1168.0
2035 Female, age 72, unknown 1084.2
2841 Male, age 80, both hemispheres 866.6
1953 Male, age 62, unknown 758.4
2106 Female, age 67, right hemisphere 702.6
Lateral thalamic nuclei
nTPM: 1270.9
2573 Female, age 94, left hemisphere 1629.4
2661 Female, age 72, unknown 1615.4
1903 Male, age 76, left hemisphere 1132.4
2577 Male, age 74, both hemispheres 1101.5
2765 Female, age 67, both hemispheres 875.7
Medial dorsal thalamic nucleus
nTPM: 1208.0
2572 Female, age 94, right hemisphere 2062.6
2492 Male, age 75, right hemisphere 1563.1
2576 Male, age 74, both hemispheres 1321.4
1810 Male, age 48, unknown 1220.4
1859 Male, age 76, both hemispheres 1220.3
2026 Male, age 62, unknown 1216.7
2402 Female, age 67, both hemispheres 1189.5
2039 Female, age 72, unknown 1165.3
2660 Female, age 72, unknown 1139.4
2498 Male, age 66, unknown 1094.9
2283 Male, age 80, right hemisphere 1044.7
1930 Female, age 42, unknown 872.6
1971 Male, age 61, right hemisphere 593.2
Medial geniculate body
nTPM: 1282.7
2650 Female, age 94, left hemisphere 1729.5
2571 Male, age 75, right hemisphere 1520.2
2657 Male, age 74, right hemisphere 1272.7
2217 Female, age 72, unknown 1246.2
2049 Male, age 76, both hemispheres 1239.7
2207 Male, age 80, right hemisphere 1107.9
1811 Female, age 42, unknown 863.0
Nucleus reuniens
nTPM: 967.1
2205 Male, age 80, left hemisphere 1208.2
2210 Female, age 85, left hemisphere 941.0
2212 Female, age 67, left hemisphere 752.1
Nucleus rhomboideus
nTPM: 967.3
2206 Male, age 80, both hemispheres 1292.8
2280 Female, age 85, left hemisphere 945.6
2213 Female, age 67, left hemisphere 663.3
Posterior thalamic nucleus
nTPM: 1427.5
2649 Female, age 94, both hemispheres 1963.1
2655 Male, age 74, right hemisphere 1820.2
2495 Female, age 67, right hemisphere 1224.3
2266 Male, age 76, right hemisphere 702.2
Pulvinar
nTPM: 1164.9
2724 Male, age 74, right hemisphere 1633.5
2582 Female, age 72, unknown 1386.8
2398 Male, age 61, left hemisphere 1243.1
2499 Male, age 66, unknown 1189.7
2496 Female, age 67, right hemisphere 1182.3
1932 Male, age 80, right hemisphere 1116.3
1899 Female, age 42, unknown 1036.0
2214 Male, age 76, right hemisphere 1009.2
1929 Male, age 48, unknown 981.9
1972 Male, age 62, unknown 870.2
Subthalamic nucleus
nTPM: 934.0
2282 Male, age 61, both hemispheres 1421.8
2216 Male, age 48, unknown 1105.0
2056 Female, age 72, unknown 924.4
2406 Female, age 72, unknown 886.0
2779 Female, age 42, unknown 848.1
2124 Male, age 62, unknown 793.3
2275 Male, age 66, unknown 754.8
2658 Male, age 74, both hemispheres 738.8
Ventral posterolateral thalamic nucleus
nTPM: 1067.3
2570 Male, age 75, right hemisphere 1383.4
2581 Female, age 72, unknown 1272.3
2197 Male, age 80, both hemispheres 1203.6
2578 Male, age 74, both hemispheres 937.7
2740 Male, age 76, right hemisphere 828.9
2397 Male, age 61, right hemisphere 777.8
Ventral posteromedial thalamic nucleus
nTPM: 1099.3
2281 Male, age 75, right hemisphere 1389.4
2127 Male, age 76, right hemisphere 1158.0
2758 Male, age 80, both hemispheres 1148.7
2653 Male, age 74, both hemispheres 935.0
2202 Male, age 61, left hemisphere 865.3
Ventral thalamic nuclei
nTPM: 1065.9
2858 Female, age 72, unknown 1288.8
2204 Male, age 80, both hemispheres 1272.8
2580 Male, age 66, unknown 1151.1
2285 Male, age 62, unknown 1022.3
1860 Male, age 76, both hemispheres 1021.4
2291 Female, age 72, unknown 1000.7
2652 Male, age 74, left hemisphere 989.9
1845 Male, age 48, unknown 974.2
1912 Female, age 42, unknown 871.6
Zona incerta
nTPM: 868.6
2208 Male, age 80, right hemisphere 1198.4
2663 Female, age 72, unknown 1024.5
2403 Male, age 62, unknown 958.7
2215 Male, age 66, unknown 637.2
2822 Male, age 74, right hemisphere 524.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1218.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1218.5
FF:10154-103A1 76 years, female 1218.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

868.5
Pig sample Sample description nTPM
Thalamus
nTPM: 868.6
Samples: 4

Max nTPM: 1110.2
Min nTPM: 644.5
Sample A Female 1055.5
Sample B Female 664.0
Sample C Male 1110.2
Sample D Male 644.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1507.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 1507.9
Samples: 4

Max nTPM: 1588.7
Min nTPM: 1371.3
Sample A Male 1371.3
Sample B Male 1588.7
Sample C Female 1531.9
Sample D Female 1539.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.1
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 14.1
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 17.1
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 14.2
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 11.0
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 7.2

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