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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:1284.7 nTPM
FANTOM5:1206.1 Scaled Tags Per Million
Pig:768.5 nTPM
Allen mouse:10.8 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1284.7
Sample id Sample description nTPM
Area postrema
nTPM: 1284.7
2799 Male, age 61, both hemispheres 1507.4
2306 Male, age 80, both hemispheres 1263.4
2054 Male, age 76, both hemispheres 1083.3
Dorsal medullary reticular nucleus
nTPM: 864.7
2088 Male, age 76, both hemispheres 967.5
2373 Male, age 61, both hemispheres 889.3
2040 Female, age 85, both hemispheres 737.3
Dorsal motor vagal complex
nTPM: 1147.5
2797 Male, age 61, both hemispheres 1946.7
2185 Male, age 76, both hemispheres 1469.1
2643 Male, age 74, both hemispheres 1194.1
2844 Male, age 55, unknown 1131.1
2813 Female, age 72, unknown 1040.9
2000 Male, age 74, unknown 875.3
2133 Female, age 91, both hemispheres 773.2
2807 Female, age 85, both hemispheres 749.5
Gigantocellular reticular nuclei, medullary
nTPM: 759.3
2022 Male, age 76, right hemisphere 1023.4
2314 Male, age 61, both hemispheres 867.9
2387 Female, age 91, both hemispheres 792.6
1876 Female, age 85, both hemispheres 759.5
2310 Male, age 80, both hemispheres 579.5
2462 Male, age 74, both hemispheres 532.7
Gigantocellular reticular nuclei, pars
nTPM: 714.8
2084 Female, age 85, both hemispheres 845.3
2336 Male, age 61, both hemispheres 708.6
2706 Male, age 80, both hemispheres 702.3
2330 Male, age 80, both hemispheres 689.9
2168 Male, age 76, both hemispheres 627.9
Inferior olive
nTPM: 1183.1
2379 Male, age 80, both hemispheres 1360.2
2085 Female, age 85, both hemispheres 1338.5
2563 Male, age 74, both hemispheres 1245.8
2628 Female, age 91, both hemispheres 994.2
2178 Male, age 61, both hemispheres 976.5
Lateral medullary reticular nucleus
nTPM: 898.7
2374 Male, age 61, both hemispheres 1069.7
2804 Female, age 91, both hemispheres 1013.7
2044 Male, age 76, both hemispheres 915.8
2852 Male, age 80, both hemispheres 898.0
2190 Female, age 85, both hemispheres 887.9
2305 Male, age 74, both hemispheres 606.8
Medial olivary nucleus
nTPM: 907.5
2138 Female, age 91, both hemispheres 1205.9
2851 Male, age 80, both hemispheres 892.2
1943 Male, age 61, both hemispheres 837.3
1962 Male, age 76, both hemispheres 694.5
Medial vestibular nucleus
nTPM: 800.2
2743 Female, age 85, both hemispheres 871.2
2134 Male, age 76, both hemispheres 867.7
2803 Female, age 91, both hemispheres 796.5
2624 Male, age 61, both hemispheres 778.2
2093 Male, age 80, both hemispheres 747.2
2801 Male, age 74, both hemispheres 740.5
Motor hypoglossal nucleus
nTPM: 776.9
2461 Male, age 61, both hemispheres 1000.3
2277 Male, age 76, both hemispheres 880.7
2125 Female, age 91, both hemispheres 781.5
2182 Male, age 80, both hemispheres 621.9
2132 Female, age 85, both hemispheres 600.2
Nucleus ambiguus
nTPM: 894.7
2071 Male, age 76, both hemispheres 1148.2
2096 Female, age 85, both hemispheres 641.1
Nucleus cuneatus
nTPM: 964.9
2562 Male, age 61, both hemispheres 1210.3
2805 Female, age 91, both hemispheres 1173.7
2100 Male, age 76, both hemispheres 1087.9
2564 Male, age 74, both hemispheres 1080.9
2380 Male, age 80, both hemispheres 1009.2
2131 Male, age 76, both hemispheres 827.4
2381 Male, age 80, both hemispheres 822.0
2376 Male, age 61, both hemispheres 753.7
2808 Female, age 85, both hemispheres 718.9
Nucleus gracilis
nTPM: 1023.8
2299 Female, age 85, both hemispheres 1070.9
2627 Male, age 74, both hemispheres 1059.9
2382 Male, age 80, both hemispheres 940.7
Nucleus raphe obscurus
nTPM: 707.9
2142 Male, age 76, midline 888.8
2800 Male, age 61, midline 625.4
2845 Female, age 85, midline 609.6
Nucleus raphe pallidus
nTPM: 619.4
2145 Male, age 76, midline 746.4
2183 Male, age 80, midline 613.8
1924 Male, age 61, midline 498.1
Nucleus tractus solitarii
nTPM: 815.6
2656 Male, age 76, both hemispheres 955.5
2144 Female, age 91, right hemisphere 862.7
2191 Female, age 85, both hemispheres 801.8
2307 Male, age 80, both hemispheres 642.4
Parvicellular reticular nuclei
nTPM: 641.5
2095 Male, age 76, both hemispheres 784.4
2119 Male, age 80, both hemispheres 682.8
2558 Male, age 74, both hemispheres 457.2
Parvicellular reticular nuclei, medullary
nTPM: 872.6
2181 Male, age 80, left hemisphere 928.2
2091 Female, age 85, both hemispheres 885.4
2189 Female, age 91, both hemispheres 804.3
Peritrigeminal nucleus
nTPM: 852.0
2136 Male, age 76, both hemispheres 991.2
2067 Female, age 85, both hemispheres 890.9
2179 Male, age 61, both hemispheres 674.1
Prepositus hypoglossal nucleus
nTPM: 818.9
2086 Male, age 80, both hemispheres 914.1
2855 Female, age 85, right hemisphere 723.8
Spinal trigeminal nucleus, caudal
nTPM: 864.5
2642 Male, age 74, both hemispheres 929.6
2308 Male, age 80, both hemispheres 923.8
2447 Male, age 76, both hemispheres 915.3
2390 Female, age 91, both hemispheres 794.7
2312 Male, age 61, both hemispheres 759.2
Spinal trigeminal nucleus, interpolar
nTPM: 815.5
2625 Male, age 61, both hemispheres 945.4
2389 Female, age 91, both hemispheres 843.7
2066 Male, age 76, right hemisphere 815.4
2033 Male, age 80, both hemispheres 754.2
2386 Female, age 85, both hemispheres 718.6
Spinal vestibular nucleus
nTPM: 865.5
2384 Male, age 74, both hemispheres 939.8
2748 Male, age 76, both hemispheres 938.4
2806 Female, age 85, both hemispheres 928.1
2186 Female, age 91, both hemispheres 861.8
2780 Male, age 80, both hemispheres 765.2
2796 Male, age 61, both hemispheres 759.8
Superior vestibular nucleus
nTPM: 1024.7
2061 Male, age 76, both hemispheres 1220.1
2383 Male, age 74, both hemispheres 999.4
2015 Male, age 80, both hemispheres 854.6
Ventral medullary reticular nucleus
nTPM: 957.1
2372 Male, age 61, both hemispheres 1062.6
2060 Male, age 76, both hemispheres 851.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 825.6
2302 Female, age 91, both hemispheres 997.3
1986 Male, age 76, both hemispheres 930.6
2118 Male, age 80, both hemispheres 783.1
2180 Male, age 61, both hemispheres 723.5
2741 Female, age 85, both hemispheres 693.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1206.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1206.1
FF:10174-103C3 60 years, female 1629.4
FF:10038-101F2 18-64 years, mixed 1052.7
FF:10155-103A2 76 years, female 936.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

768.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 768.5
Samples: 4

Max nTPM: 930.4
Min nTPM: 670.4
Sample A Female 670.4
Sample B Female 930.4
Sample C Male 774.5
Sample D Male 698.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 10.8
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 13.7
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 8.1
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 8.0
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 5.9

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