PONS AND MEDULLA - Expression summary
Protein expressioni No data
RNA expressioni
HPA Brain:1284.7 nTPM
FANTOM5:1564.0 Scaled Tags Per Million
Pig:778.3 nTPM
Mouse:1356.9 nTPM
Allen mouse:10.8 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1284.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 809.9
2301 Female, age 85, both hemispheres 942.7
1984 Male, age 76, both hemispheres 897.9
2090 Male, age 80, both hemispheres 738.1
2188 Female, age 91, both hemispheres 660.8
Area postrema
nTPM: 1284.7
2799 Male, age 61, both hemispheres 1507.4
2306 Male, age 80, both hemispheres 1263.4
2054 Male, age 76, both hemispheres 1083.3
Dorsal cochlear nucleus
nTPM: 1048.5
2802 Male, age 74, right hemisphere 1273.6
2058 Male, age 76, both hemispheres 1140.5
2378 Male, age 80, both hemispheres 1125.7
2370 Male, age 61, both hemispheres 964.9
2187 Female, age 91, both hemispheres 737.9
Dorsal medullary reticular nucleus
nTPM: 864.7
2088 Male, age 76, both hemispheres 967.5
2373 Male, age 61, both hemispheres 889.3
2040 Female, age 85, both hemispheres 737.3
Dorsal motor vagal complex
nTPM: 1147.5
2797 Male, age 61, both hemispheres 1946.7
2185 Male, age 76, both hemispheres 1469.1
2643 Male, age 74, both hemispheres 1194.1
2844 Male, age 55, unknown 1131.1
2813 Female, age 72, unknown 1040.9
2000 Male, age 74, unknown 875.3
2133 Female, age 91, both hemispheres 773.2
2807 Female, age 85, both hemispheres 749.5
Dorsal tegmental nucleus
nTPM: 932.8
1936 Male, age 76, left hemisphere 1201.4
2083 Male, age 80, both hemispheres 980.8
2326 Male, age 74, both hemispheres 938.0
2358 Male, age 61, both hemispheres 610.9
Dorsolateral tegmental area
nTPM: 801.6
2141 Male, age 76, both hemispheres 964.4
2654 Male, age 80, both hemispheres 949.3
2751 Female, age 85, both hemispheres 869.7
2360 Male, age 74, both hemispheres 826.0
2337 Male, age 61, both hemispheres 398.5
Gigantocellular reticular nuclei, medullary
nTPM: 759.3
2022 Male, age 76, right hemisphere 1023.4
2314 Male, age 61, both hemispheres 867.9
2387 Female, age 91, both hemispheres 792.6
1876 Female, age 85, both hemispheres 759.5
2310 Male, age 80, both hemispheres 579.5
2462 Male, age 74, both hemispheres 532.7
Gigantocellular reticular nuclei, pars
nTPM: 714.8
2084 Female, age 85, both hemispheres 845.3
2336 Male, age 61, both hemispheres 708.6
2706 Male, age 80, both hemispheres 702.3
2330 Male, age 80, both hemispheres 689.9
2168 Male, age 76, both hemispheres 627.9
Inferior olive
nTPM: 1183.1
2379 Male, age 80, both hemispheres 1360.2
2085 Female, age 85, both hemispheres 1338.5
2563 Male, age 74, both hemispheres 1245.8
2628 Female, age 91, both hemispheres 994.2
2178 Male, age 61, both hemispheres 976.5
Kolliker-Fuse nucleus
nTPM: 990.3
2315 Male, age 76, right hemisphere 1535.2
2163 Male, age 80, both hemispheres 774.4
2793 Female, age 91, left hemisphere 661.2
Lateral lemniscal nuclei
nTPM: 587.0
2169 Male, age 76, both hemispheres 750.6
2036 Male, age 80, both hemispheres 617.5
2746 Female, age 85, left hemisphere 550.7
2320 Female, age 91, left hemisphere 541.5
2453 Male, age 74, right hemisphere 474.5
Lateral medullary reticular nucleus
nTPM: 898.7
2374 Male, age 61, both hemispheres 1069.7
2804 Female, age 91, both hemispheres 1013.7
2044 Male, age 76, both hemispheres 915.8
2852 Male, age 80, both hemispheres 898.0
2190 Female, age 85, both hemispheres 887.9
2305 Male, age 74, both hemispheres 606.8
Lateral parabrachial nucleus
nTPM: 821.8
2792 Male, age 76, both hemispheres 1089.6
2139 Female, age 85, right hemisphere 881.4
2013 Male, age 80, both hemispheres 858.0
2790 Male, age 61, both hemispheres 458.2
Lateral vestibular nucleus
nTPM: 941.7
2184 Male, age 76, both hemispheres 1001.6
2311 Male, age 80, both hemispheres 881.9
Locus coeruleus
nTPM: 936.0
2317 Female, age 72, unknown 1150.8
2720 Male, age 74, both hemispheres 970.3
2162 Male, age 80, both hemispheres 960.9
1980 Male, age 76, both hemispheres 932.4
2014 Male, age 55, unknown 864.9
2788 Male, age 74, unknown 852.3
2123 Female, age 91, both hemispheres 820.2
Medial olivary nucleus
nTPM: 907.5
2138 Female, age 91, both hemispheres 1205.9
2851 Male, age 80, both hemispheres 892.2
1943 Male, age 61, both hemispheres 837.3
1962 Male, age 76, both hemispheres 694.5
Medial parabrachial nucleus
nTPM: 763.5
2786 Male, age 76, both hemispheres 953.6
2463 Female, age 85, right hemisphere 934.0
2854 Male, age 80, both hemispheres 644.8
2170 Female, age 91, both hemispheres 642.6
2156 Male, age 61, both hemispheres 642.3
Medial periolivary nuclei
nTPM: 578.5
2063 Male, age 76, both hemispheres 743.6
2791 Male, age 74, right hemisphere 603.7
2081 Male, age 80, both hemispheres 563.6
2458 Female, age 91, both hemispheres 537.2
2171 Female, age 85, both hemispheres 444.3
Medial vestibular nucleus
nTPM: 800.2
2743 Female, age 85, both hemispheres 871.2
2134 Male, age 76, both hemispheres 867.7
2803 Female, age 91, both hemispheres 796.5
2624 Male, age 61, both hemispheres 778.2
2093 Male, age 80, both hemispheres 747.2
2801 Male, age 74, both hemispheres 740.5
Motor facial nucleus
nTPM: 646.2
2795 Female, age 91, both hemispheres 828.4
2062 Male, age 76, both hemispheres 799.7
2697 Female, age 85, both hemispheres 596.2
2126 Male, age 61, both hemispheres 588.7
2365 Male, age 74, right hemisphere 567.4
2327 Male, age 80, both hemispheres 496.7
Motor hypoglossal nucleus
nTPM: 776.9
2461 Male, age 61, both hemispheres 1000.3
2277 Male, age 76, both hemispheres 880.7
2125 Female, age 91, both hemispheres 781.5
2182 Male, age 80, both hemispheres 621.9
2132 Female, age 85, both hemispheres 600.2
Motor trigeminal nucleus
nTPM: 629.2
2309 Male, age 76, both hemispheres 925.1
2335 Male, age 61, both hemispheres 606.3
2560 Male, age 74, both hemispheres 594.0
2321 Female, age 91, both hemispheres 545.0
2079 Male, age 80, both hemispheres 475.5
Nuclei of the trapezoid body
nTPM: 610.8
1983 Male, age 76, both hemispheres 764.5
2368 Female, age 91, both hemispheres 699.7
2166 Male, age 80, both hemispheres 645.1
2159 Male, age 61, both hemispheres 522.4
2735 Female, age 85, both hemispheres 422.2
Nucleus ambiguus
nTPM: 894.7
2071 Male, age 76, both hemispheres 1148.2
2096 Female, age 85, both hemispheres 641.1
Nucleus cuneatus
nTPM: 964.9
2562 Male, age 61, both hemispheres 1210.3
2805 Female, age 91, both hemispheres 1173.7
2100 Male, age 76, both hemispheres 1087.9
2564 Male, age 74, both hemispheres 1080.9
2380 Male, age 80, both hemispheres 1009.2
2131 Male, age 76, both hemispheres 827.4
2381 Male, age 80, both hemispheres 822.0
2376 Male, age 61, both hemispheres 753.7
2808 Female, age 85, both hemispheres 718.9
Nucleus gracilis
nTPM: 1023.8
2299 Female, age 85, both hemispheres 1070.9
2627 Male, age 74, both hemispheres 1059.9
2382 Male, age 80, both hemispheres 940.7
Nucleus raphe magnus
nTPM: 523.1
2051 Male, age 76, both hemispheres 723.4
2328 Male, age 80, both hemispheres 679.4
2455 Male, age 74, both hemispheres 532.6
2459 Female, age 91, both hemispheres 506.0
2160 Male, age 61, both hemispheres 407.7
2172 Female, age 85, both hemispheres 289.4
Nucleus raphe obscurus
nTPM: 707.9
2142 Male, age 76, midline 888.8
2800 Male, age 61, midline 625.4
2845 Female, age 85, midline 609.6
Nucleus raphe pallidus
nTPM: 619.4
2145 Male, age 76, midline 746.4
2183 Male, age 80, midline 613.8
1924 Male, age 61, midline 498.1
Nucleus tractus solitarii
nTPM: 815.6
2656 Male, age 76, both hemispheres 955.5
2144 Female, age 91, right hemisphere 862.7
2191 Female, age 85, both hemispheres 801.8
2307 Male, age 80, both hemispheres 642.4
Paramedian reticular nucleus
nTPM: 636.3
2057 Male, age 80, both hemispheres 710.5
2052 Male, age 76, both hemispheres 709.0
2313 Male, age 61, both hemispheres 616.1
2050 Female, age 85, both hemispheres 509.5
Parvicellular reticular nuclei
nTPM: 641.5
2095 Male, age 76, both hemispheres 784.4
2119 Male, age 80, both hemispheres 682.8
2558 Male, age 74, both hemispheres 457.2
Parvicellular reticular nuclei, medullary
nTPM: 872.6
2181 Male, age 80, left hemisphere 928.2
2091 Female, age 85, both hemispheres 885.4
2189 Female, age 91, both hemispheres 804.3
Pedunculopontine tegmental nucleus
nTPM: 881.1
1921 Female, age 85, both hemispheres 1199.8
2334 Male, age 80, both hemispheres 978.0
2338 Male, age 61, both hemispheres 465.4
Peritrigeminal nucleus
nTPM: 852.0
2136 Male, age 76, both hemispheres 991.2
2067 Female, age 85, both hemispheres 890.9
2179 Male, age 61, both hemispheres 674.1
Pontine nuclei
nTPM: 512.0
1968 Male, age 76, left hemisphere 737.4
2115 Male, age 80, left hemisphere 668.6
2319 Female, age 91, both hemispheres 575.2
1863 Male, age 55, unknown 523.5
2109 Female, age 72, unknown 458.9
2454 Male, age 74, left hemisphere 426.2
2787 Female, age 85, both hemispheres 369.9
2727 Male, age 61, right hemisphere 336.3
Pontine raphe nucleus
nTPM: 820.3
2853 Male, age 76, midline 1052.8
2122 Female, age 85, midline 587.9
Posteroventral cochlear nucleus
nTPM: 835.0
2371 Male, age 61, both hemispheres 1154.3
2070 Male, age 76, both hemispheres 826.2
2341 Male, age 80, both hemispheres 779.3
2752 Female, age 85, both hemispheres 762.6
2135 Female, age 91, both hemispheres 652.9
Prepositus hypoglossal nucleus
nTPM: 818.9
2086 Male, age 80, both hemispheres 914.1
2855 Female, age 85, right hemisphere 723.8
Principal sensory trigeminal nucleus
nTPM: 649.8
2324 Male, age 76, both hemispheres 1170.6
2158 Male, age 61, both hemispheres 490.4
2367 Female, age 91, left hemisphere 475.4
2008 Male, age 80, left hemisphere 462.8
Reticular pontine nucleus, caudal
nTPM: 607.6
2092 Male, age 76, both hemispheres 851.6
2559 Male, age 74, both hemispheres 570.6
2457 Female, age 91, both hemispheres 550.0
2332 Male, age 80, right hemisphere 458.1
Reticular pontine nucleus, oral
nTPM: 732.3
2167 Male, age 76, both hemispheres 1061.3
1939 Male, age 80, both hemispheres 925.7
2366 Female, age 91, both hemispheres 678.2
2012 Female, age 85, both hemispheres 659.2
2361 Male, age 74, both hemispheres 337.0
Reticulotegmental nucleus
nTPM: 795.2
2325 Male, age 76, both hemispheres 862.4
2333 Male, age 80, both hemispheres 789.8
2452 Male, age 74, both hemispheres 782.5
2322 Female, age 91, both hemispheres 746.0
Spinal trigeminal nucleus, caudal
nTPM: 864.5
2642 Male, age 74, both hemispheres 929.6
2308 Male, age 80, both hemispheres 923.8
2447 Male, age 76, both hemispheres 915.3
2390 Female, age 91, both hemispheres 794.7
2312 Male, age 61, both hemispheres 759.2
Spinal trigeminal nucleus, interpolar
nTPM: 815.5
2625 Male, age 61, both hemispheres 945.4
2389 Female, age 91, both hemispheres 843.7
2066 Male, age 76, right hemisphere 815.4
2033 Male, age 80, both hemispheres 754.2
2386 Female, age 85, both hemispheres 718.6
Spinal trigeminal nucleus, oral
nTPM: 811.6
1978 Male, age 76, both hemispheres 958.0
2737 Female, age 85, both hemispheres 766.8
2164 Male, age 80, both hemispheres 710.0
Spinal vestibular nucleus
nTPM: 865.5
2384 Male, age 74, both hemispheres 939.8
2748 Male, age 76, both hemispheres 938.4
2806 Female, age 85, both hemispheres 928.1
2186 Female, age 91, both hemispheres 861.8
2780 Male, age 80, both hemispheres 765.2
2796 Male, age 61, both hemispheres 759.8
Subcoeruleus area
nTPM: 851.4
2451 Male, age 74, both hemispheres 1120.1
2369 Female, age 85, left hemisphere 882.0
2323 Female, age 91, left hemisphere 825.5
1958 Male, age 80, both hemispheres 715.9
2089 Male, age 76, left hemisphere 713.5
Superior olive
nTPM: 613.5
2020 Male, age 76, both hemispheres 838.1
2329 Male, age 80, right hemisphere 618.9
2364 Male, age 74, right hemisphere 588.3
2561 Female, age 91, both hemispheres 567.7
1875 Female, age 85, both hemispheres 454.5
Superior vestibular nucleus
nTPM: 1024.7
2061 Male, age 76, both hemispheres 1220.1
2383 Male, age 74, both hemispheres 999.4
2015 Male, age 80, both hemispheres 854.6
Ventral medullary reticular nucleus
nTPM: 957.1
2372 Male, age 61, both hemispheres 1062.6
2060 Male, age 76, both hemispheres 851.6
Ventral periolivary nuclei
nTPM: 622.8
2023 Male, age 76, both hemispheres 792.2
2165 Male, age 80, both hemispheres 626.1
2130 Female, age 85, both hemispheres 587.6
2794 Female, age 91, left hemisphere 485.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 825.6
2302 Female, age 91, both hemispheres 997.3
1986 Male, age 76, both hemispheres 930.6
2118 Male, age 80, both hemispheres 783.1
2180 Male, age 61, both hemispheres 723.5
2741 Female, age 85, both hemispheres 693.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 682.7
2359 Male, age 61, both hemispheres 778.5
2456 Female, age 91, both hemispheres 731.8
1959 Male, age 76, both hemispheres 707.9
2161 Male, age 80, both hemispheres 687.6
2840 Female, age 85, both hemispheres 674.7
2449 Male, age 74, both hemispheres 515.7

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1564.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1564.0
FF:10182-103D2 60 years, female 2169.0
FF:10165-103B3 76 years, female 959.0
Medulla oblongata
Scaled Tags Per Million: 1206.1
FF:10174-103C3 60 years, female 1629.4
FF:10038-101F2 18-64 years, mixed 1052.7
FF:10155-103A2 76 years, female 936.2
Pons
Scaled Tags Per Million: 695.9
FF:10033-101E6 18-54 years, mixed 695.9

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 778.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 768.5
Samples: 4

Max nTPM: 930.4
Min nTPM: 670.4
Sample A Female 670.4
Sample B Female 930.4
Sample C Male 774.5
Sample D Male 698.6
Pons
nTPM: 778.3
Samples: 4

Max nTPM: 904.2
Min nTPM: 638.6
Sample A Female 813.2
Sample B Female 638.6
Sample C Male 904.2
Sample D Male 757.0

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 1356.9
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 1357.0
Samples: 4

Max nTPM: 1420.6
Min nTPM: 1246.2
Sample A Male 1356.7
Sample B Male 1246.2
Sample C Female 1404.4
Sample D Female 1420.6

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 10.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 10.8
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 13.7
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 8.1
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 8.0
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 5.9
Pons
Expression energy: 10.6
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 13.0
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 8.3
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 7.9
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 6.6

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