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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:502.6 nTPM
HPA Brain:236.2 nTPM
GTEx:502.6 nTPM
FANTOM5:623.4 Scaled Tags Per Million
Pig:169.9 nTPM
Mouse:412.8 nTPM
Allen mouse:18.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.2
Sample id Sample description nTPM
Amygdala
nTPM: 231.0
2514 Male, age 75, right hemisphere 251.0
1987 Female, age 91, left hemisphere 249.9
2517 Female, age 94, left hemisphere 221.9
2814 Male, age 76, right hemisphere 217.3
2695 Female, age 67, right hemisphere 214.6
Basal amygdala
nTPM: 225.7
2110 Male, age 80, left hemisphere 268.9
2243 Female, age 91, right hemisphere 244.4
2609 Male, age 75, right hemisphere 239.3
2685 Female, age 94, left hemisphere 233.8
1955 Male, age 76, both hemispheres 203.0
2827 Female, age 67, right hemisphere 164.8
Central amygdala
nTPM: 236.2
2701 Female, age 91, right hemisphere 275.8
2239 Male, age 80, left hemisphere 252.6
2826 Female, age 94, left hemisphere 232.7
2515 Male, age 75, right hemisphere 220.1
1905 Male, age 76, both hemispheres 200.0
Corticomedial amygdala
nTPM: 234.3
2829 Male, age 80, left hemisphere 272.7
2242 Female, age 91, right hemisphere 242.4
2428 Male, age 75, right hemisphere 236.5
2429 Female, age 94, left hemisphere 235.1
2240 Male, age 76, both hemispheres 218.2
2535 Female, age 67, right hemisphere 201.0
Lateral amygdala
nTPM: 206.1
2516 Male, age 75, right hemisphere 235.5
2534 Female, age 94, left hemisphere 233.0
2255 Female, age 91, right hemisphere 220.7
1883 Male, age 76, both hemispheres 210.4
2256 Male, age 80, left hemisphere 187.7
2830 Female, age 67, right hemisphere 149.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

502.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 502.6
Samples: 152

Max nTPM: 1473.5
Min nTPM: 108.7
Std nTPM: 189.3
Median nTPM: 475.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1473.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1339.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1108.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1040.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 913.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 884.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 836.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 823.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 793.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 783.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 765.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 761.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 749.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 731.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 727.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 714.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 710.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 705.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 695.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 660.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 656.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 656.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 653.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 652.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 650.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 646.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 645.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 639.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 634.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 631.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 624.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 622.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 592.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 588.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 586.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 573.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 565.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 564.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 561.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 560.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 559.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 558.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 554.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 550.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 548.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 548.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 542.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 541.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 539.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 530.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 528.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 526.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 525.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 523.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 521.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 516.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 512.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 511.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 507.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 504.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 501.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 499.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 499.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 499.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 498.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 496.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 496.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 496.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 496.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 491.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 490.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 490.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 488.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 482.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 478.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 476.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 475.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 474.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 473.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 466.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 464.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 462.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 457.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 456.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 456.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 455.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 447.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 445.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 444.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 442.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 436.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 434.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 434.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 427.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 426.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 423.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 421.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 420.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 417.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 417.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 416.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 416.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 411.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 410.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 410.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 404.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 404.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 403.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 400.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 396.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 392.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 388.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 386.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 386.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 380.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 373.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 373.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 366.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 364.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 364.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 361.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 360.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 359.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 353.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 352.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 350.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 350.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 350.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 349.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 343.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 343.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 337.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 335.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 335.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 334.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 334.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 328.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 306.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 304.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 298.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 293.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 290.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 289.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 284.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 280.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 278.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 271.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 252.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 246.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 241.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 183.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

623.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 623.4
FF:10151-102I7 76 years, female 623.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

169.9
Pig sample Sample description nTPM
Amygdala
nTPM: 169.9
Samples: 4

Max nTPM: 259.7
Min nTPM: 133.8
Sample A Female 259.7
Sample B Female 152.3
Sample C Male 133.9
Sample D Male 133.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

412.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 412.8
Samples: 4

Max nTPM: 433.0
Min nTPM: 381.1
Sample A Male 433.0
Sample B Male 418.7
Sample C Female 381.1
Sample D Female 418.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.1
1786 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 18.1
1787 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 12.4

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