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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:299.2 nTPM
HPA Brain:269.3 nTPM
GTEx:299.2 nTPM
FANTOM5:516.8 Scaled Tags Per Million
Pig:132.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 237.1
1981 Female, age 72, midline 277.6
2194 Female, age 79, both hemispheres 273.4
2048 Male, age 55, midline 215.0
2816 Male, age 47, midline 212.0
2565 Male, age 75, midline 207.7
Cervical spinal cord, dorsal horn
nTPM: 269.3
2297 Male, age 75, both hemispheres 295.7
2069 Male, age 47, both hemispheres 276.8
2173 Female, age 72, unknown 276.4
2721 Male, age 90, both hemispheres 262.0
2296 Male, age 66, both hemispheres 257.2
1877 Male, age 55, unknown 247.6
Cervical spinal cord, ventral horn
nTPM: 240.0
2068 Male, age 55, unknown 262.8
2480 Male, age 75, both hemispheres 245.0
2820 Female, age 79, both hemispheres 241.5
2295 Male, age 66, both hemispheres 232.8
2098 Female, age 72, unknown 231.6
2809 Male, age 90, both hemispheres 226.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

299.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 299.2
Samples: 159

Max nTPM: 525.2
Min nTPM: 139.3
Std nTPM: 64.1
Median nTPM: 294.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 525.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 516.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 479.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 451.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 441.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 436.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 422.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 416.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 415.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 407.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 401.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 395.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 394.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 390.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 387.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 378.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 376.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 375.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 367.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 364.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 362.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 362.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 358.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 357.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 351.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 350.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 348.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 347.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 346.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 346.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 346.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 346.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 346.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 345.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 343.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 342.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 342.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 339.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 337.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 336.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 336.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 333.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 331.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 331.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 329.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 328.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 326.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 325.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 325.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 324.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 324.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 321.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 321.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 320.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 320.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 318.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 318.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 315.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 311.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 311.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 309.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 309.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 308.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 308.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 308.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 308.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 307.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 306.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 304.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 302.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 302.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 299.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 299.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 299.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 297.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 297.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 297.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 296.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 294.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 294.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 292.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 290.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 289.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 289.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 289.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 289.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 288.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 286.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 285.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 285.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 285.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 284.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 283.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 283.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 281.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 279.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 278.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 278.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 277.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 274.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 273.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 273.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 272.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 271.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 270.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 269.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 268.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 267.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 266.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 266.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 266.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 265.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 264.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 264.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 263.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 261.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 261.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 261.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 258.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 256.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 256.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 256.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 255.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 254.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 254.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 253.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 249.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 246.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 245.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 245.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 243.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 242.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 241.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 241.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 238.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 237.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 229.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 228.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 225.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 219.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 219.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 218.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 217.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 214.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 214.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 212.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 210.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 210.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 209.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 208.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 208.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 207.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 207.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 193.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 190.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 187.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 177.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 139.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

516.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 516.8
FF:10181-103D1 60 years, female 830.9
FF:10159-103A6 76 years, female 202.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 124.6
Samples: 4

Max nTPM: 157.7
Min nTPM: 97.9
Sample A Female 157.7
Sample B Female 117.0
Sample C Male 97.9
Sample D Male 125.9
Ventral spinal cord
nTPM: 132.4
Samples: 4

Max nTPM: 149.1
Min nTPM: 117.4
Sample A Female 117.4
Sample B Female 144.8
Sample C Male 149.1
Sample D Male 118.2

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