MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:449.5 nTPM
HPA Brain:330.1 nTPM
GTEx:449.5 nTPM
FANTOM5:252.9 Scaled Tags Per Million
Pig:193.8 nTPM
Mouse:401.2 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 330.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.7
1827 Male, age 72, unknown 266.9
1870 Female, age 42, unknown 248.3
2219 Male, age 76, both hemispheres 246.8
2411 Female, age 72, unknown 244.3
1833 Male, age 53, unknown 237.4
2666 Male, age 74, left hemisphere 207.1
2586 Male, age 75, left hemisphere 200.3
1830 Male, age 51, unknown 197.2
2828 Female, age 72, unknown 183.6
2019 Male, age 18, unknown 135.4
Dorsal raphe nucleus
nTPM: 259.9
2047 Male, age 72, unknown 304.4
2298 Female, age 72, unknown 287.6
1828 Male, age 53, unknown 260.1
2750 Male, age 76, both hemispheres 245.2
2016 Female, age 72, unknown 202.2
Inferior colliculus
nTPM: 245.4
2849 Male, age 72, unknown 282.0
1848 Female, age 42, unknown 242.6
2097 Female, age 72, unknown 240.0
1890 Male, age 53, unknown 217.1
Median raphe nucleus
nTPM: 330.1
2220 Male, age 76, midline 330.1
Periaquaductal grey, anterior
nTPM: 249.6
1947 Male, age 18, unknown 322.8
1795 Male, age 51, unknown 229.0
2502 Female, age 75, unknown 197.0
Periaquaductal grey, dorsal
nTPM: 247.8
1840 Male, age 53, unknown 286.8
2850 Male, age 76, both hemispheres 265.1
2464 Female, age 72, unknown 224.2
1831 Male, age 72, unknown 215.0
Periaquaductal grey, lateral
nTPM: 216.7
2140 Male, age 76, both hemispheres 235.5
2053 Male, age 18, unknown 224.5
2272 Male, age 74, both hemispheres 190.0
Pretectal area
nTPM: 225.9
2224 Female, age 72, unknown 287.9
2825 Male, age 18, unknown 279.6
1816 Male, age 51, unknown 234.0
2667 Female, age 75, unknown 231.2
1944 Female, age 72, unknown 221.4
2007 Male, age 72, unknown 219.3
1817 Female, age 42, unknown 211.2
1815 Male, age 53, unknown 209.1
2273 Male, age 74, both hemispheres 199.7
2316 Male, age 76, right hemisphere 198.9
2407 Male, age 75, both hemispheres 192.0
Red nucleus
nTPM: 192.6
1821 Female, age 72, unknown 247.6
2725 Female, age 75, unknown 242.7
1954 Female, age 42, unknown 205.5
2503 Female, age 72, unknown 200.6
2588 Male, age 74, left hemisphere 196.4
2823 Male, age 76, right hemisphere 190.7
2227 Male, age 72, unknown 189.1
2769 Male, age 72, unknown 181.6
1865 Male, age 51, unknown 181.5
1904 Male, age 53, unknown 175.0
2584 Male, age 75, left hemisphere 167.5
2785 Male, age 18, unknown 132.4
Substantia nigra
nTPM: 249.0
1916 Female, age 42, unknown 351.4
2699 Male, age 18, unknown 288.1
1851 Male, age 51, unknown 272.5
1941 Male, age 53, unknown 251.3
1889 Female, age 72, unknown 251.1
2241 Male, age 72, unknown 246.5
2665 Male, age 74, both hemispheres 226.4
2590 Female, age 75, unknown 224.0
2409 Female, age 72, unknown 200.7
2583 Male, age 75, right hemisphere 177.8
Superior colliculus
nTPM: 207.4
1895 Male, age 76, right hemisphere 244.2
1839 Male, age 51, unknown 233.2
2261 Male, age 18, unknown 229.5
1796 Male, age 53, unknown 216.5
2587 Male, age 74, left hemisphere 216.5
2668 Female, age 75, unknown 211.4
2664 Male, age 75, both hemispheres 206.7
2087 Female, age 72, unknown 193.9
1913 Female, age 42, unknown 174.8
1995 Male, age 72, unknown 147.0
Ventral tegmental area
nTPM: 261.9
1915 Female, age 42, unknown 314.4
2218 Male, age 76, both hemispheres 292.1
2410 Female, age 72, unknown 246.9
2021 Male, age 53, unknown 240.2
2223 Female, age 72, unknown 239.7
1942 Male, age 51, unknown 238.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 449.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 449.5
Samples: 139

Max nTPM: 995.5
Min nTPM: 221.4
Std nTPM: 127.9
Median nTPM: 436.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 995.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 868.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 773.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 772.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 711.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 696.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 681.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 679.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 655.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 641.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 640.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 252.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 252.9
FF:10158-103A5 76 years, female 252.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 193.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 181.3
Samples: 4

Max nTPM: 277.4
Min nTPM: 81.1
Sample A Female 277.4
Sample B Female 139.9
Sample C Male 226.6
Sample D Male 81.1
Midbrain
nTPM: 193.8
Samples: 4

Max nTPM: 218.9
Min nTPM: 157.5
Sample A Female 157.5
Sample B Female 183.2
Sample C Male 218.9
Sample D Male 215.5
Periaqueductal gray
nTPM: 193.0
Samples: 3

Max nTPM: 240.0
Min nTPM: 163.1
Sample B Female 175.8
Sample C Male 240.0
Sample D Male 163.1
Superior colliculi
nTPM: 188.5
Samples: 4

Max nTPM: 237.9
Min nTPM: 128.2
Sample A Female 237.9
Sample B Female 128.2
Sample C Male 210.5
Sample D Male 177.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 401.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 401.2
Samples: 4

Max nTPM: 414.0
Min nTPM: 372.1
Sample A Male 414.0
Sample B Male 408.5
Sample C Female 372.1
Sample D Female 410.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
1786 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 12.0
1787 Antisense, RP_040526_02_H04, Mouse strain C57BL/6J (56 days, male) 11.5

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