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  • TSC22D4
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:613.3 nTPM
HPA Brain:523.5 nTPM
GTEx:613.3 nTPM
FANTOM5:441.2 Scaled Tags Per Million
Pig:80.1 nTPM
Mouse:203.4 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

523.5
Sample id Sample description nTPM
Amygdala
nTPM: 519.8
2695 Female, age 67, right hemisphere 734.0
2814 Male, age 76, right hemisphere 606.5
2517 Female, age 94, left hemisphere 458.7
2514 Male, age 75, right hemisphere 405.7
1987 Female, age 91, left hemisphere 394.0
Basal amygdala
nTPM: 411.9
2609 Male, age 75, right hemisphere 573.5
1955 Male, age 76, both hemispheres 452.6
2827 Female, age 67, right hemisphere 386.0
2110 Male, age 80, left hemisphere 372.8
2685 Female, age 94, left hemisphere 368.1
2243 Female, age 91, right hemisphere 318.3
Central amygdala
nTPM: 523.5
2826 Female, age 94, left hemisphere 666.2
1905 Male, age 76, both hemispheres 575.4
2515 Male, age 75, right hemisphere 545.4
2239 Male, age 80, left hemisphere 436.8
2701 Female, age 91, right hemisphere 393.9
Corticomedial amygdala
nTPM: 339.4
2428 Male, age 75, right hemisphere 432.5
2829 Male, age 80, left hemisphere 401.0
2240 Male, age 76, both hemispheres 331.4
2535 Female, age 67, right hemisphere 293.7
2429 Female, age 94, left hemisphere 290.6
2242 Female, age 91, right hemisphere 287.3
Lateral amygdala
nTPM: 495.8
2516 Male, age 75, right hemisphere 564.3
2256 Male, age 80, left hemisphere 534.7
1883 Male, age 76, both hemispheres 508.0
2830 Female, age 67, right hemisphere 486.0
2534 Female, age 94, left hemisphere 471.2
2255 Female, age 91, right hemisphere 410.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

613.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 613.3
Samples: 152

Max nTPM: 1277.0
Min nTPM: 38.0
Std nTPM: 230.1
Median nTPM: 592.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1277.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1227.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1175.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1160.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1147.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1144.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1064.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1062.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1027.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1006.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 984.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 972.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 948.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 938.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 927.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 925.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 921.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 901.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 889.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 887.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 883.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 867.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 862.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 858.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 848.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 847.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 832.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 825.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 824.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 813.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 811.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 810.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 807.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 796.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 792.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 792.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 778.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 774.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 771.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 753.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 743.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 717.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 712.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 705.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 695.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 693.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 692.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 688.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 687.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 680.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 668.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 664.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 659.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 657.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 657.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 655.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 655.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 651.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 648.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 647.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 646.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 633.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 629.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 627.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 623.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 621.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 621.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 618.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 617.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 613.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 609.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 609.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 605.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 601.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 597.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 596.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 587.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 587.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 586.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 579.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 577.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 570.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 561.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 560.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 558.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 553.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 548.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 546.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 544.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 542.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 536.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 528.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 520.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 516.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 512.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 508.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 500.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 496.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 492.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 489.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 487.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 486.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 485.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 477.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 471.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 469.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 462.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 462.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 462.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 461.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 461.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 459.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 458.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 447.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 444.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 443.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 433.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 428.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 427.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 426.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 420.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 413.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 401.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 397.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 394.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 394.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 389.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 386.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 378.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 376.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 372.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 366.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 365.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 362.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 360.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 359.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 359.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 358.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 346.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 346.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 341.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 335.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 334.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 308.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 293.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 289.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 289.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 253.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 247.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 207.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 167.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 38.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

441.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 441.2
FF:10151-102I7 76 years, female 441.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.1
Pig sample Sample description nTPM
Amygdala
nTPM: 80.2
Samples: 4

Max nTPM: 101.9
Min nTPM: 60.7
Sample A Female 79.5
Sample B Female 101.9
Sample C Male 78.5
Sample D Male 60.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 203.4
Samples: 4

Max nTPM: 283.9
Min nTPM: 166.2
Sample A Male 167.4
Sample B Male 166.2
Sample C Female 283.9
Sample D Female 196.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 4.3
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 2.9
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.1

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