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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
630.7
nTPM
FANTOM5:
780.2
Scaled Tags Per Million
Pig:
164.4
nTPM
Allen mouse:
3.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
630.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 523.4
2301
Female, age 85, both hemispheres
623.7
2188
Female, age 91, both hemispheres
583.8
2090
Male, age 80, both hemispheres
499.4
1984
Male, age 76, both hemispheres
386.8
Dorsal cochlear nucleus nTPM: 547.6
2802
Male, age 74, right hemisphere
573.1
2058
Male, age 76, both hemispheres
568.0
2370
Male, age 61, both hemispheres
563.6
2187
Female, age 91, both hemispheres
527.1
2378
Male, age 80, both hemispheres
506.1
Dorsal tegmental nucleus nTPM: 510.0
2083
Male, age 80, both hemispheres
603.8
1936
Male, age 76, left hemisphere
576.5
2326
Male, age 74, both hemispheres
506.7
2358
Male, age 61, both hemispheres
353.2
Dorsolateral tegmental area nTPM: 507.2
2654
Male, age 80, both hemispheres
616.6
2751
Female, age 85, both hemispheres
592.9
2337
Male, age 61, both hemispheres
477.5
2141
Male, age 76, both hemispheres
430.2
2360
Male, age 74, both hemispheres
418.8
Kolliker-Fuse nucleus nTPM: 559.7
2793
Female, age 91, left hemisphere
583.8
2315
Male, age 76, right hemisphere
572.8
2163
Male, age 80, both hemispheres
522.6
Lateral lemniscal nuclei nTPM: 418.9
2320
Female, age 91, left hemisphere
484.9
2746
Female, age 85, left hemisphere
432.8
2169
Male, age 76, both hemispheres
414.8
2036
Male, age 80, both hemispheres
412.1
2453
Male, age 74, right hemisphere
349.8
Lateral parabrachial nucleus nTPM: 523.4
2792
Male, age 76, both hemispheres
708.1
2013
Male, age 80, both hemispheres
504.5
2139
Female, age 85, right hemisphere
468.3
2790
Male, age 61, both hemispheres
412.6
Lateral vestibular nucleus nTPM: 630.7
2184
Male, age 76, both hemispheres
631.3
2311
Male, age 80, both hemispheres
630.0
Locus coeruleus nTPM: 398.9
2317
Female, age 72, unknown
525.7
1980
Male, age 76, both hemispheres
428.9
2162
Male, age 80, both hemispheres
418.7
2720
Male, age 74, both hemispheres
372.0
2014
Male, age 55, unknown
367.0
2123
Female, age 91, both hemispheres
349.1
2788
Male, age 74, unknown
331.1
Medial parabrachial nucleus nTPM: 562.8
2170
Female, age 91, both hemispheres
608.6
2463
Female, age 85, right hemisphere
600.5
2156
Male, age 61, both hemispheres
579.5
2786
Male, age 76, both hemispheres
561.9
2854
Male, age 80, both hemispheres
463.5
Medial periolivary nuclei nTPM: 430.3
2791
Male, age 74, right hemisphere
482.9
2081
Male, age 80, both hemispheres
441.1
2458
Female, age 91, both hemispheres
441.1
2063
Male, age 76, both hemispheres
439.8
2171
Female, age 85, both hemispheres
346.7
Motor facial nucleus nTPM: 433.7
2795
Female, age 91, both hemispheres
520.9
2126
Male, age 61, both hemispheres
513.7
2062
Male, age 76, both hemispheres
433.0
2697
Female, age 85, both hemispheres
422.2
2365
Male, age 74, right hemisphere
419.6
2327
Male, age 80, both hemispheres
292.9
Motor trigeminal nucleus nTPM: 464.4
2309
Male, age 76, both hemispheres
566.3
2335
Male, age 61, both hemispheres
511.8
2321
Female, age 91, both hemispheres
449.4
2560
Male, age 74, both hemispheres
422.9
2079
Male, age 80, both hemispheres
371.8
Nuclei of the trapezoid body nTPM: 403.1
2368
Female, age 91, both hemispheres
466.7
2166
Male, age 80, both hemispheres
445.0
1983
Male, age 76, both hemispheres
437.7
2159
Male, age 61, both hemispheres
364.4
2735
Female, age 85, both hemispheres
301.6
Nucleus raphe magnus nTPM: 371.2
2051
Male, age 76, both hemispheres
517.1
2459
Female, age 91, both hemispheres
414.7
2328
Male, age 80, both hemispheres
401.3
2455
Male, age 74, both hemispheres
359.6
2160
Male, age 61, both hemispheres
317.3
2172
Female, age 85, both hemispheres
217.1
Paramedian reticular nucleus nTPM: 426.0
2057
Male, age 80, both hemispheres
504.2
2313
Male, age 61, both hemispheres
450.7
2050
Female, age 85, both hemispheres
375.2
2052
Male, age 76, both hemispheres
373.8
Pedunculopontine tegmental nucleus nTPM: 456.8
2334
Male, age 80, both hemispheres
515.4
1921
Female, age 85, both hemispheres
462.2
2338
Male, age 61, both hemispheres
392.7
Pontine nuclei nTPM: 419.3
2319
Female, age 91, both hemispheres
511.3
1968
Male, age 76, left hemisphere
479.6
1863
Male, age 55, unknown
465.0
2115
Male, age 80, left hemisphere
455.4
2109
Female, age 72, unknown
425.9
2454
Male, age 74, left hemisphere
412.3
2787
Female, age 85, both hemispheres
337.0
2727
Male, age 61, right hemisphere
267.6
Pontine raphe nucleus nTPM: 440.8
2853
Male, age 76, midline
537.0
2122
Female, age 85, midline
344.5
Posteroventral cochlear nucleus nTPM: 539.2
2371
Male, age 61, both hemispheres
633.3
2135
Female, age 91, both hemispheres
572.4
2341
Male, age 80, both hemispheres
534.3
2070
Male, age 76, both hemispheres
503.5
2752
Female, age 85, both hemispheres
452.3
Principal sensory trigeminal nucleus nTPM: 444.3
2324
Male, age 76, both hemispheres
634.6
2367
Female, age 91, left hemisphere
449.3
2158
Male, age 61, both hemispheres
358.5
2008
Male, age 80, left hemisphere
335.0
Reticular pontine nucleus, caudal nTPM: 456.9
2092
Male, age 76, both hemispheres
528.1
2457
Female, age 91, both hemispheres
488.7
2559
Male, age 74, both hemispheres
463.0
2332
Male, age 80, right hemisphere
347.7
Reticular pontine nucleus, oral nTPM: 496.3
2167
Male, age 76, both hemispheres
601.6
1939
Male, age 80, both hemispheres
596.4
2366
Female, age 91, both hemispheres
545.6
2012
Female, age 85, both hemispheres
402.7
2361
Male, age 74, both hemispheres
335.4
Reticulotegmental nucleus nTPM: 491.8
2333
Male, age 80, both hemispheres
525.7
2322
Female, age 91, both hemispheres
516.8
2452
Male, age 74, both hemispheres
474.2
2325
Male, age 76, both hemispheres
450.6
Spinal trigeminal nucleus, oral nTPM: 464.9
2164
Male, age 80, both hemispheres
504.2
1978
Male, age 76, both hemispheres
497.9
2737
Female, age 85, both hemispheres
392.8
Subcoeruleus area nTPM: 492.3
2369
Female, age 85, left hemisphere
621.7
2451
Male, age 74, both hemispheres
508.6
1958
Male, age 80, both hemispheres
448.4
2089
Male, age 76, left hemisphere
445.8
2323
Female, age 91, left hemisphere
437.0
Superior olive nTPM: 425.1
2020
Male, age 76, both hemispheres
499.7
2364
Male, age 74, right hemisphere
443.2
2561
Female, age 91, both hemispheres
442.8
2329
Male, age 80, right hemisphere
403.6
1875
Female, age 85, both hemispheres
336.2
Ventral periolivary nuclei nTPM: 386.7
2023
Male, age 76, both hemispheres
482.4
2165
Male, age 80, both hemispheres
421.3
2794
Female, age 91, left hemisphere
348.3
2130
Female, age 85, both hemispheres
294.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 463.0
2359
Male, age 61, both hemispheres
557.4
2456
Female, age 91, both hemispheres
500.2
1959
Male, age 76, both hemispheres
474.6
2161
Male, age 80, both hemispheres
454.9
2840
Female, age 85, both hemispheres
427.7
2449
Male, age 74, both hemispheres
362.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
164.4
Pig sample
Sample description
nTPM
Pons nTPM: 164.4
Samples: 4
Max nTPM: 215.1
Min nTPM: 122.8
Sample A
Female
146.5
Sample B
Female
122.8
Sample C
Male
173.2
Sample D
Male
215.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
