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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:756.3 nTPM
FANTOM5:732.8 Scaled Tags Per Million
Pig:159.2 nTPM
Mouse:191.7 nTPM
Allen mouse:2.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

756.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 426.4
2497 Male, age 66, unknown 471.4
2032 Female, age 42, unknown 459.5
2396 Male, age 61, right hemisphere 348.3
Centromedial thalamic nucleus
nTPM: 683.5
2279 Female, age 85, left hemisphere 842.3
2401 Male, age 76, right hemisphere 524.6
Habenula
nTPM: 394.1
2276 Male, age 66, unknown 451.4
1957 Male, age 80, both hemispheres 380.8
2203 Male, age 61, left hemisphere 375.4
2252 Male, age 62, unknown 368.6
Lateral geniculate body
nTPM: 610.7
2575 Female, age 94, right hemisphere 749.6
2857 Male, age 74, right hemisphere 744.5
2659 Male, age 66, unknown 658.8
2841 Male, age 80, both hemispheres 653.9
2035 Female, age 72, unknown 603.6
2399 Male, age 61, left hemisphere 528.2
1953 Male, age 62, unknown 483.1
2106 Female, age 67, right hemisphere 464.1
Lateral thalamic nuclei
nTPM: 628.2
2573 Female, age 94, left hemisphere 811.2
2661 Female, age 72, unknown 645.3
2765 Female, age 67, both hemispheres 610.6
2577 Male, age 74, both hemispheres 603.9
1903 Male, age 76, left hemisphere 469.9
Medial dorsal thalamic nucleus
nTPM: 536.7
2572 Female, age 94, right hemisphere 1127.2
2576 Male, age 74, both hemispheres 621.4
2660 Female, age 72, unknown 620.4
1859 Male, age 76, both hemispheres 570.7
2492 Male, age 75, right hemisphere 510.0
1810 Male, age 48, unknown 509.9
2026 Male, age 62, unknown 459.7
2402 Female, age 67, both hemispheres 456.5
2498 Male, age 66, unknown 456.0
2283 Male, age 80, right hemisphere 449.4
2039 Female, age 72, unknown 429.3
1930 Female, age 42, unknown 422.9
1971 Male, age 61, right hemisphere 343.3
Medial geniculate body
nTPM: 629.3
2571 Male, age 75, right hemisphere 874.4
2650 Female, age 94, left hemisphere 782.7
2217 Female, age 72, unknown 655.6
2657 Male, age 74, right hemisphere 624.5
2207 Male, age 80, right hemisphere 566.1
2049 Male, age 76, both hemispheres 521.1
1811 Female, age 42, unknown 380.7
Nucleus reuniens
nTPM: 598.4
2210 Female, age 85, left hemisphere 806.2
2205 Male, age 80, left hemisphere 650.1
2212 Female, age 67, left hemisphere 338.8
Nucleus rhomboideus
nTPM: 560.9
2280 Female, age 85, left hemisphere 813.2
2206 Male, age 80, both hemispheres 463.7
2213 Female, age 67, left hemisphere 405.8
Posterior thalamic nucleus
nTPM: 756.3
2649 Female, age 94, both hemispheres 1397.4
2655 Male, age 74, right hemisphere 729.0
2495 Female, age 67, right hemisphere 466.8
2266 Male, age 76, right hemisphere 432.1
Pulvinar
nTPM: 542.3
2398 Male, age 61, left hemisphere 616.2
2724 Male, age 74, right hemisphere 613.1
2582 Female, age 72, unknown 593.3
1932 Male, age 80, right hemisphere 571.9
2499 Male, age 66, unknown 542.3
1899 Female, age 42, unknown 541.1
1972 Male, age 62, unknown 512.2
1929 Male, age 48, unknown 498.8
2214 Male, age 76, right hemisphere 490.2
2496 Female, age 67, right hemisphere 444.0
Subthalamic nucleus
nTPM: 604.0
2282 Male, age 61, both hemispheres 783.2
2124 Male, age 62, unknown 738.4
2056 Female, age 72, unknown 722.4
2216 Male, age 48, unknown 719.8
2779 Female, age 42, unknown 552.5
2275 Male, age 66, unknown 498.2
2658 Male, age 74, both hemispheres 473.7
2406 Female, age 72, unknown 343.6
Ventral posterolateral thalamic nucleus
nTPM: 559.8
2581 Female, age 72, unknown 647.2
2570 Male, age 75, right hemisphere 644.2
2740 Male, age 76, right hemisphere 571.3
2578 Male, age 74, both hemispheres 541.6
2197 Male, age 80, both hemispheres 514.1
2397 Male, age 61, right hemisphere 440.5
Ventral posteromedial thalamic nucleus
nTPM: 539.3
2281 Male, age 75, right hemisphere 641.5
2127 Male, age 76, right hemisphere 611.3
2653 Male, age 74, both hemispheres 534.3
2758 Male, age 80, both hemispheres 530.7
2202 Male, age 61, left hemisphere 378.6
Ventral thalamic nuclei
nTPM: 596.0
2291 Female, age 72, unknown 719.6
2858 Female, age 72, unknown 695.5
2580 Male, age 66, unknown 659.1
2204 Male, age 80, both hemispheres 605.0
2652 Male, age 74, left hemisphere 604.9
1860 Male, age 76, both hemispheres 562.3
2285 Male, age 62, unknown 535.8
1845 Male, age 48, unknown 521.7
1912 Female, age 42, unknown 459.8
Zona incerta
nTPM: 494.8
2403 Male, age 62, unknown 549.6
2663 Female, age 72, unknown 524.5
2208 Male, age 80, right hemisphere 508.5
2215 Male, age 66, unknown 482.7
2822 Male, age 74, right hemisphere 408.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

732.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 732.8
FF:10154-103A1 76 years, female 732.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.2
Pig sample Sample description nTPM
Thalamus
nTPM: 159.2
Samples: 4

Max nTPM: 222.5
Min nTPM: 127.2
Sample A Female 134.1
Sample B Female 127.2
Sample C Male 152.9
Sample D Male 222.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.7
Mouse sample Sample description nTPM
Thalamus
nTPM: 191.7
Samples: 4

Max nTPM: 260.9
Min nTPM: 132.9
Sample A Male 260.9
Sample B Male 132.9
Sample C Female 215.1
Sample D Female 157.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.6
1465 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 5.0
1464 Antisense, RP_040420_01_D05, Mouse strain C57BL/6J (56 days, male) 3.0
74581363 Antisense, RP_060215_03_B02, Mouse strain C57BL/6J (56 days, male) 0.2

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