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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:458.9 nTPM
FANTOM5:500.6 Scaled Tags Per Million
Pig:247.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047224Antibody HPA058546Antibody CAB008630
Glial cells Not detectedNot detectedLow
Neuronal cells Not detectedNot detectedLow





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 458.9
Samples: 246

Max nTPM: 970.7
Min nTPM: 194.6
Std nTPM: 117.2
Median nTPM: 442.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 970.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 898.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 893.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 798.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 783.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 753.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 752.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 748.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 741.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 733.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 706.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 690.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 687.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 658.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 647.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 644.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 644.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 633.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 630.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 622.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 615.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 609.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 606.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 603.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 588.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 587.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 587.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 586.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 582.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 577.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 575.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 573.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 571.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 569.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 567.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 566.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 565.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 565.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 561.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 559.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 558.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 557.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 556.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 554.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 554.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 554.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 553.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 552.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 551.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 549.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 542.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 538.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 529.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 528.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 528.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 525.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 524.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 523.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 523.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 522.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 513.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 506.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 506.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 506.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 503.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 501.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 499.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 499.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 498.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 497.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 497.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 492.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 492.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 491.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 491.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 491.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 490.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 487.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 486.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 485.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 484.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 484.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 484.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 483.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 483.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 482.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 480.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 479.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 478.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 477.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 474.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 474.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 471.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 471.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 469.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 469.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 466.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 462.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 462.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 461.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 461.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 460.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 459.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 456.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 455.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 454.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 454.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 453.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 452.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 451.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 451.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 451.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 450.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 448.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 448.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 447.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 446.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 445.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 444.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 444.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 444.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 443.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 443.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 442.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 442.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 441.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 440.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 438.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 437.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 435.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 434.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 434.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 434.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 433.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 433.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 433.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 432.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 426.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 426.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 426.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 424.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 424.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 423.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 423.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 421.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 419.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 418.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 417.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 417.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 416.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 416.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 415.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 415.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 414.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 413.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 412.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 411.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 411.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 410.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 409.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 409.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 407.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 405.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 403.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 403.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 402.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 402.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 402.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 400.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 397.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 396.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 396.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 395.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 395.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 394.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 393.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 393.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 392.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 392.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 391.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 389.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 387.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 386.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 386.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 385.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 384.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 383.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 383.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 383.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 382.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 382.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 382.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 381.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 379.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 378.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 377.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 376.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 372.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 369.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 369.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 366.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 364.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 363.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 361.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 361.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 360.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 360.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 359.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 358.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 354.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 352.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 351.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 348.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 348.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 346.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 346.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 345.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 344.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 343.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 339.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 330.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 328.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 327.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 326.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 326.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 319.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 317.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 317.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 315.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 312.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 308.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 307.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 305.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 302.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 301.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 292.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 284.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 284.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 280.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 276.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 261.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 261.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 251.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 246.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 196.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 194.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

500.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 500.6
FF:10164-103B2 76 years, female 500.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.3
Pig sample Sample description nTPM
Caudate
nTPM: 247.3
Samples: 4

Max nTPM: 303.1
Min nTPM: 207.6
Sample A Female 208.8
Sample B Female 269.6
Sample C Male 303.1
Sample D Male 207.6

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