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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:363.6 nTPM
HPA Brain:293.9 nTPM
GTEx:363.6 nTPM
FANTOM5:334.3 Scaled Tags Per Million
Pig:332.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

293.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 290.2
2565 Male, age 75, midline 369.1
1981 Female, age 72, midline 313.1
2194 Female, age 79, both hemispheres 291.0
2816 Male, age 47, midline 241.0
2048 Male, age 55, midline 237.0
Cervical spinal cord, dorsal horn
nTPM: 293.9
2721 Male, age 90, both hemispheres 361.6
2173 Female, age 72, unknown 313.1
2069 Male, age 47, both hemispheres 299.7
2296 Male, age 66, both hemispheres 265.3
2297 Male, age 75, both hemispheres 265.3
1877 Male, age 55, unknown 258.6
Cervical spinal cord, ventral horn
nTPM: 293.0
2295 Male, age 66, both hemispheres 324.3
2480 Male, age 75, both hemispheres 305.2
2098 Female, age 72, unknown 300.0
2809 Male, age 90, both hemispheres 299.3
2068 Male, age 55, unknown 277.5
2820 Female, age 79, both hemispheres 251.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 363.6
Samples: 159

Max nTPM: 796.6
Min nTPM: 192.7
Std nTPM: 86.0
Median nTPM: 356.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 796.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 597.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 583.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 582.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 579.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 576.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 571.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 514.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 505.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 495.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 486.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 476.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 468.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 466.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 464.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 458.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 456.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 453.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 453.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 448.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 442.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 441.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 441.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 439.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 439.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 438.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 436.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 436.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 429.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 426.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 425.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 423.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 419.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 416.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 415.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 413.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 410.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 409.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 407.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 405.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 403.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 403.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 402.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 400.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 397.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 397.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 395.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 393.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 392.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 392.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 391.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 388.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 388.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 387.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 387.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 385.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 381.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 379.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 378.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 377.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 376.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 374.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 373.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 372.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 372.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 369.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 369.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 368.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 367.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 364.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 364.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 364.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 362.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 362.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 362.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 361.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 360.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 357.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 356.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 356.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 355.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 354.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 354.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 353.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 353.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 349.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 346.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 346.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 344.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 344.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 343.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 342.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 341.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 340.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 338.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 336.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 336.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 336.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 334.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 334.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 333.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 333.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 330.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 328.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 328.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 326.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 325.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 319.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 319.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 317.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 317.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 316.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 316.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 315.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 313.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 313.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 310.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 309.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 309.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 307.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 306.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 305.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 305.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 305.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 304.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 303.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 302.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 302.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 301.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 297.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 295.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 293.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 291.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 290.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 286.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 285.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 279.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 274.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 273.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 270.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 270.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 268.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 267.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 257.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 255.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 251.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 249.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 246.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 244.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 243.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 240.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 240.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 237.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 236.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 233.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 226.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 211.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 195.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 192.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

334.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 334.3
FF:10181-103D1 60 years, female 355.3
FF:10159-103A6 76 years, female 313.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 252.7
Samples: 4

Max nTPM: 282.0
Min nTPM: 214.5
Sample A Female 282.0
Sample B Female 214.5
Sample C Male 251.5
Sample D Male 262.9
Ventral spinal cord
nTPM: 332.2
Samples: 4

Max nTPM: 372.0
Min nTPM: 256.1
Sample A Female 343.5
Sample B Female 357.0
Sample C Male 372.0
Sample D Male 256.1

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