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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3027.5 nTPM
GTEx:3027.5 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Mouse:1286.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3027.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 3027.5
Samples: 105

Max nTPM: 4289.4
Min nTPM: 2177.9
Std nTPM: 467.4
Median nTPM:
307_1 66 years, female 4289.4
495_1 57 years, female 4156.5
308_1 70 years, female 4111.5
375_1 74 years, female 3982.5
526_1 61 years, male 3879.9
377_1 82 years, female 3796.9
319_1 81 years, male 3794.4
311_1 78 years, male 3793.2
2_1 77 years, female 3768.1
480_1 63 years, male 3724.7
389_1 86 years, female 3699.1
189_1 76 years, male 3687.5
414_1 84 years, female 3678.5
316_1 62 years, male 3655.2
384_1 83 years, male 3587.3
246_1 77 years, male 3514.9
386_1 76 years, male 3514.2
237_1 82 years, male 3497.1
322_1 76 years, male 3493.7
447_1 81 years, male 3492.7
394_1 75 years, female 3491.9
415_1 77 years, female 3414.6
6_1 73 years, female 3408.1
396_1 62 years, male 3376.0
379_1 60 years, male 3367.2
17_1 71 years, male 3354.2
35_1 74 years, female 3333.0
229_1 69 years, female 3300.4
405_1 91 years, male 3297.0
321_1 62 years, female 3269.0
376_1 75 years, female 3264.5
425_1 59 years, female 3237.0
315_1 62 years, female 3208.8
266_1 85 years, male 3182.3
218_1 71 years, female 3165.1
354_1 81 years, female 3161.1
99_1 64 years, male 3156.3
518_1 75 years, female 3148.7
120_1 70 years, female 3124.6
313_1 79 years, female 3118.1
172_1 72 years, female 3102.0
466_1 57 years, female 3087.0
352_1 62 years, male 3078.1
324_1 76 years, male 3075.4
452_1 88 years, female 3072.5
347_1 72 years, male 3068.3
126_1 63 years, male 3067.8
137_1 83 years, male 3064.2
499_1 55 years, female 3029.2
406_1 79 years, male 3009.4
320_1 89 years, female 2972.7
335_1 73 years, female 2959.7
173_1 67 years, male 2951.7
251_1 78 years, male 2949.4
353_1 82 years, female 2944.0
117_1 61 years, male 2926.6
243_1 75 years, male 2916.2
139_1 64 years, female 2913.7
348_1 84 years, male 2913.3
288_1 66 years, female 2912.1
286_1 68 years, female 2888.6
349_1 83 years, male 2882.8
265_1 87 years, male 2882.6
291_1 76 years, male 2878.0
318_1 68 years, male 2857.9
501_1 88 years, male 2848.3
4_1 88 years, female 2844.1
153_1 70 years, female 2834.8
81_1 67 years, male 2814.5
177_1 74 years, male 2798.3
295_1 61 years, female 2777.2
254_1 77 years, female 2773.7
351_1 91 years, male 2756.1
350_1 84 years, female 2755.4
468_1 89 years, male 2729.9
293_1 68 years, female 2722.1
145_1 84 years, male 2714.7
404_1 82 years, female 2710.0
490_1 67 years, female 2697.5
142_1 61 years, female 2689.2
163_1 78 years, male 2685.4
356_1 87 years, female 2654.9
355_1 70 years, female 2646.0
115_1 83 years, male 2627.8
162_1 79 years, female 2614.3
41_1 94 years, female 2601.7
292_1 71 years, male 2585.3
413_1 59 years, female 2574.3
43_1 64 years, female 2569.0
264_1 73 years, female 2553.9
314_1 67 years, male 2529.0
503_1 68 years, male 2512.1
119_1 70 years, female 2489.6
18_1 88 years, male 2465.6
9_1 66 years, female 2463.9
109_1 81 years, female 2422.9
217_1 76 years, male 2387.1
491_1 89 years, female 2366.3
517_1 88 years, male 2340.4
317_1 60 years, male 2316.0
89_1 63 years, male 2259.8
32_1 67 years, male 2257.8
149_1 88 years, male 2235.6
506_1 65 years, male 2183.6
42_1 85 years, male 2177.9
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 135.8
FF:10030-101E3 24-65 years, mixed 135.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1286.7
Mouse sample Sample description nTPM
Retina
nTPM: 1286.7
Samples: 4

Max nTPM: 1522.7
Min nTPM: 1096.7
Sample A Male 1387.0
Sample B Male 1140.4
Sample C Female 1522.7
Sample D Female 1096.7

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