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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:5007.1 nTPM
FANTOM5:152.4 Scaled Tags Per Million
Mouse:3706.1 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5007.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 4219.2
2396 Male, age 61, right hemisphere 6106.5
2497 Male, age 66, unknown 3599.9
2032 Female, age 42, unknown 2951.4
Centromedial thalamic nucleus
nTPM: 3393.9
2279 Female, age 85, left hemisphere 3765.7
2401 Male, age 76, right hemisphere 3022.2
Habenula
nTPM: 2729.8
2276 Male, age 66, unknown 3189.2
2203 Male, age 61, left hemisphere 2878.7
1957 Male, age 80, both hemispheres 2429.8
2252 Male, age 62, unknown 2421.6
Lateral geniculate body
nTPM: 3994.1
2575 Female, age 94, right hemisphere 5037.7
2857 Male, age 74, right hemisphere 4836.0
2659 Male, age 66, unknown 4505.1
2841 Male, age 80, both hemispheres 3816.9
1953 Male, age 62, unknown 3781.3
2399 Male, age 61, left hemisphere 3665.7
2035 Female, age 72, unknown 3304.8
2106 Female, age 67, right hemisphere 3005.4
Lateral thalamic nuclei
nTPM: 4312.6
2573 Female, age 94, left hemisphere 5340.9
2577 Male, age 74, both hemispheres 4949.2
2661 Female, age 72, unknown 4736.4
2765 Female, age 67, both hemispheres 3428.2
1903 Male, age 76, left hemisphere 3108.3
Medial dorsal thalamic nucleus
nTPM: 3483.7
2572 Female, age 94, right hemisphere 6651.7
1971 Male, age 61, right hemisphere 3884.3
2576 Male, age 74, both hemispheres 3825.2
2498 Male, age 66, unknown 3684.5
2660 Female, age 72, unknown 3641.4
2492 Male, age 75, right hemisphere 3606.4
1859 Male, age 76, both hemispheres 3366.6
1810 Male, age 48, unknown 3253.9
1930 Female, age 42, unknown 2981.5
2026 Male, age 62, unknown 2737.2
2039 Female, age 72, unknown 2697.0
2283 Male, age 80, right hemisphere 2638.3
2402 Female, age 67, both hemispheres 2320.1
Medial geniculate body
nTPM: 4035.8
2571 Male, age 75, right hemisphere 6133.7
2650 Female, age 94, left hemisphere 4260.6
2657 Male, age 74, right hemisphere 4086.7
2217 Female, age 72, unknown 4074.8
2207 Male, age 80, right hemisphere 3870.8
2049 Male, age 76, both hemispheres 3294.4
1811 Female, age 42, unknown 2529.6
Nucleus reuniens
nTPM: 3611.5
2210 Female, age 85, left hemisphere 3983.2
2205 Male, age 80, left hemisphere 3941.4
2212 Female, age 67, left hemisphere 2909.9
Nucleus rhomboideus
nTPM: 3024.1
2280 Female, age 85, left hemisphere 3730.8
2206 Male, age 80, both hemispheres 2894.5
2213 Female, age 67, left hemisphere 2447.0
Posterior thalamic nucleus
nTPM: 5007.1
2649 Female, age 94, both hemispheres 8630.4
2655 Male, age 74, right hemisphere 5078.7
2266 Male, age 76, right hemisphere 3554.7
2495 Female, age 67, right hemisphere 2764.7
Pulvinar
nTPM: 3361.5
2724 Male, age 74, right hemisphere 3943.8
2398 Male, age 61, left hemisphere 3833.4
2214 Male, age 76, right hemisphere 3568.6
1972 Male, age 62, unknown 3497.2
2499 Male, age 66, unknown 3439.4
1899 Female, age 42, unknown 3280.3
2496 Female, age 67, right hemisphere 3130.8
1932 Male, age 80, right hemisphere 3081.9
2582 Female, age 72, unknown 2996.8
1929 Male, age 48, unknown 2842.7
Subthalamic nucleus
nTPM: 3774.7
2124 Male, age 62, unknown 5197.1
2216 Male, age 48, unknown 4680.7
2779 Female, age 42, unknown 3857.7
2056 Female, age 72, unknown 3749.2
2658 Male, age 74, both hemispheres 3544.6
2282 Male, age 61, both hemispheres 3541.7
2275 Male, age 66, unknown 3309.4
2406 Female, age 72, unknown 2317.1
Ventral posterolateral thalamic nucleus
nTPM: 3554.7
2578 Male, age 74, both hemispheres 4261.9
2740 Male, age 76, right hemisphere 3760.0
2397 Male, age 61, right hemisphere 3681.7
2581 Female, age 72, unknown 3555.8
2570 Male, age 75, right hemisphere 3378.4
2197 Male, age 80, both hemispheres 2690.5
Ventral posteromedial thalamic nucleus
nTPM: 3638.9
2653 Male, age 74, both hemispheres 5076.5
2127 Male, age 76, right hemisphere 4060.2
2202 Male, age 61, left hemisphere 3721.2
2281 Male, age 75, right hemisphere 2958.4
2758 Male, age 80, both hemispheres 2378.0
Ventral thalamic nuclei
nTPM: 3954.6
2580 Male, age 66, unknown 4859.8
2858 Female, age 72, unknown 4559.5
2291 Female, age 72, unknown 4127.2
2652 Male, age 74, left hemisphere 4060.1
2204 Male, age 80, both hemispheres 3915.4
1860 Male, age 76, both hemispheres 3802.9
1845 Male, age 48, unknown 3754.0
2285 Male, age 62, unknown 3332.7
1912 Female, age 42, unknown 3180.3
Zona incerta
nTPM: 3361.5
2822 Male, age 74, right hemisphere 4172.2
2663 Female, age 72, unknown 3483.4
2403 Male, age 62, unknown 3413.3
2208 Male, age 80, right hemisphere 2975.5
2215 Male, age 66, unknown 2763.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 152.4
FF:10154-103A1 76 years, female 152.4

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3706.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 3706.1
Samples: 4

Max nTPM: 4325.5
Min nTPM: 3205.0
Sample A Male 3900.9
Sample B Male 3392.8
Sample C Female 4325.5
Sample D Female 3205.0

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