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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:9264.6 nTPM
HPA Brain:5749.3 nTPM
GTEx:9264.6 nTPM
FANTOM5:234.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5749.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 4489.9
1981 Female, age 72, midline 5147.6
2565 Male, age 75, midline 4974.8
2194 Female, age 79, both hemispheres 4279.5
2816 Male, age 47, midline 4084.2
2048 Male, age 55, midline 3963.6
Cervical spinal cord, dorsal horn
nTPM: 4019.3
2173 Female, age 72, unknown 5630.5
2069 Male, age 47, both hemispheres 4501.9
2296 Male, age 66, both hemispheres 4434.5
1877 Male, age 55, unknown 3855.7
2721 Male, age 90, both hemispheres 2934.0
2297 Male, age 75, both hemispheres 2759.2
Cervical spinal cord, ventral horn
nTPM: 5749.3
2809 Male, age 90, both hemispheres 7429.3
2480 Male, age 75, both hemispheres 7159.7
2295 Male, age 66, both hemispheres 5659.6
2098 Female, age 72, unknown 5225.5
2068 Male, age 55, unknown 4757.7
2820 Female, age 79, both hemispheres 4264.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9264.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9264.6
Samples: 159

Max nTPM: 21778.0
Min nTPM: 3699.1
Std nTPM: 3303.8
Median nTPM: 8744.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 21778.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 21522.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 18541.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 17899.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16970.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 15787.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 15758.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 15445.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 15356.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 15292.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 14322.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 14203.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 14182.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 14125.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 14076.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 14069.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 13591.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13531.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13422.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 13371.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 13201.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13130.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 12949.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 12923.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 12787.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 12555.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 12480.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 12259.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 12092.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 11981.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11931.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 11635.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 11507.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 11390.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 11325.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 11276.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 11180.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 10981.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 10936.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10919.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 10882.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 10866.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10754.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 10719.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 10711.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 10667.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 10638.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10538.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 10303.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 10219.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 10188.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 9950.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9912.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 9891.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 9840.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 9703.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9591.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 9591.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 9585.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9556.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 9512.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 9405.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 9384.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 9337.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 9324.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9214.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 9139.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9119.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 9055.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 9046.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9038.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 9022.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 8999.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 8989.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 8947.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 8873.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 8867.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8768.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 8762.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 8744.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 8727.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 8673.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8659.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8658.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 8584.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8521.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8394.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 8383.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8330.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 8317.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 8285.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8244.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 8221.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8056.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8044.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 8025.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 8025.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7975.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7936.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 7829.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 7746.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7740.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7630.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7519.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 7513.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7499.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7435.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 7390.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7331.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 7219.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7210.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 7200.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 7195.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 7109.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 7050.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 6963.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 6873.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 6863.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 6809.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6774.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6759.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6738.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 6696.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6665.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6664.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 6632.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6610.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 6587.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 6509.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6504.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6413.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6412.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 6323.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6266.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 6236.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6165.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6094.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6059.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 5996.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5979.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 5935.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 5907.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 5729.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5596.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 5524.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 5471.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5415.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 5354.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 5187.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 5052.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 4922.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4828.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4642.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4509.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4494.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 4451.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 4441.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 4261.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 3699.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

234.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 234.4
FF:10181-103D1 60 years, female 300.8
FF:10159-103A6 76 years, female 167.9

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