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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1045.1 nTPM
HPA Brain:1111.2 nTPM
GTEx:1045.1 nTPM
FANTOM5:1507.2 Scaled Tags Per Million
Mouse:332.4 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1111.2
Sample id Sample description nTPM
Amygdala
nTPM: 1060.7
2695 Female, age 67, right hemisphere 1297.6
1987 Female, age 91, left hemisphere 1217.2
2514 Male, age 75, right hemisphere 1098.3
2517 Female, age 94, left hemisphere 907.6
2814 Male, age 76, right hemisphere 782.9
Basal amygdala
nTPM: 986.1
2609 Male, age 75, right hemisphere 1385.0
1955 Male, age 76, both hemispheres 1031.0
2243 Female, age 91, right hemisphere 1019.9
2827 Female, age 67, right hemisphere 887.9
2110 Male, age 80, left hemisphere 823.0
2685 Female, age 94, left hemisphere 769.8
Central amygdala
nTPM: 1111.2
2515 Male, age 75, right hemisphere 1669.7
2826 Female, age 94, left hemisphere 1373.2
2239 Male, age 80, left hemisphere 897.9
2701 Female, age 91, right hemisphere 860.2
1905 Male, age 76, both hemispheres 755.2
Corticomedial amygdala
nTPM: 938.0
2428 Male, age 75, right hemisphere 1318.9
2242 Female, age 91, right hemisphere 999.7
2240 Male, age 76, both hemispheres 961.6
2829 Male, age 80, left hemisphere 910.7
2535 Female, age 67, right hemisphere 801.1
2429 Female, age 94, left hemisphere 636.1
Lateral amygdala
nTPM: 1079.0
2256 Male, age 80, left hemisphere 1412.8
2830 Female, age 67, right hemisphere 1265.0
2516 Male, age 75, right hemisphere 1239.2
2255 Female, age 91, right hemisphere 918.1
2534 Female, age 94, left hemisphere 892.1
1883 Male, age 76, both hemispheres 747.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1045.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1045.1
Samples: 152

Max nTPM: 2428.8
Min nTPM: 108.6
Std nTPM: 409.3
Median nTPM: 969.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 2428.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2425.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2281.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2154.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2099.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1923.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1921.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1897.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1817.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1807.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1760.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1736.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1715.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1675.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1620.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1603.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1538.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1531.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1491.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1471.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1466.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1390.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1355.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1348.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1343.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1332.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1331.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1321.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1314.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1310.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1302.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1300.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1297.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1261.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1240.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1236.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1236.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1234.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1233.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1230.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1230.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1228.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1224.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1214.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1212.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1212.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1203.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1184.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1177.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1171.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1159.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1132.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1132.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1121.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1117.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1111.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1111.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1109.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1079.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1070.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1046.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1042.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1041.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1039.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1034.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1026.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1015.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1013.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1012.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 999.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 988.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 981.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 980.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 975.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 974.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 972.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 967.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 952.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 947.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 946.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 934.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 934.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 930.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 923.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 919.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 916.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 912.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 906.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 904.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 898.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 897.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 894.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 886.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 878.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 869.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 866.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 853.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 850.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 843.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 840.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 839.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 838.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 836.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 835.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 830.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 824.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 824.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 815.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 810.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 798.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 798.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 797.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 789.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 788.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 777.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 774.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 770.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 767.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 763.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 762.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 757.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 753.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 711.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 705.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 700.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 694.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 693.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 684.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 679.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 679.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 679.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 677.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 669.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 666.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 655.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 632.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 624.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 622.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 621.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 614.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 610.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 608.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 607.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 592.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 561.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 529.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 473.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 384.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 381.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 278.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 108.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1507.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1507.2
FF:10151-102I7 76 years, female 1507.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 332.4
Samples: 4

Max nTPM: 525.2
Min nTPM: 222.1
Sample A Male 222.1
Sample B Male 261.9
Sample C Female 525.2
Sample D Female 320.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
74431465 Antisense, RP_060207_02_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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