MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:707.2 nTPM
HPA Brain:728.9 nTPM
GTEx:707.2 nTPM
FANTOM5:754.1 Scaled Tags Per Million
Mouse:139.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 728.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 454.8
2828 Female, age 72, unknown 1120.4
1870 Female, age 42, unknown 588.6
2586 Male, age 75, left hemisphere 553.0
1827 Male, age 72, unknown 531.3
2666 Male, age 74, left hemisphere 451.0
1830 Male, age 51, unknown 327.6
1833 Male, age 53, unknown 282.6
2019 Male, age 18, unknown 263.6
2411 Female, age 72, unknown 240.6
2219 Male, age 76, both hemispheres 189.0
Dorsal raphe nucleus
nTPM: 418.6
2016 Female, age 72, unknown 747.5
1828 Male, age 53, unknown 471.9
2047 Male, age 72, unknown 323.1
2750 Male, age 76, both hemispheres 290.2
2298 Female, age 72, unknown 260.5
Inferior colliculus
nTPM: 339.8
1848 Female, age 42, unknown 488.9
2849 Male, age 72, unknown 424.4
1890 Male, age 53, unknown 229.9
2097 Female, age 72, unknown 215.7
Median raphe nucleus
nTPM: 366.3
2220 Male, age 76, midline 366.3
Periaquaductal grey, anterior
nTPM: 483.6
1795 Male, age 51, unknown 628.9
2502 Female, age 75, unknown 531.6
1947 Male, age 18, unknown 290.3
Periaquaductal grey, dorsal
nTPM: 549.3
1831 Male, age 72, unknown 847.2
2850 Male, age 76, both hemispheres 620.3
1840 Male, age 53, unknown 479.3
2464 Female, age 72, unknown 250.5
Periaquaductal grey, lateral
nTPM: 728.6
2053 Male, age 18, unknown 1026.3
2272 Male, age 74, both hemispheres 582.4
2140 Male, age 76, both hemispheres 577.0
Pretectal area
nTPM: 625.5
2407 Male, age 75, both hemispheres 1007.0
2316 Male, age 76, right hemisphere 976.2
2273 Male, age 74, both hemispheres 714.8
2825 Male, age 18, unknown 667.9
2224 Female, age 72, unknown 639.8
1815 Male, age 53, unknown 585.5
1816 Male, age 51, unknown 563.9
2667 Female, age 75, unknown 559.2
1944 Female, age 72, unknown 548.4
1817 Female, age 42, unknown 372.5
2007 Male, age 72, unknown 245.5
Red nucleus
nTPM: 363.8
2503 Female, age 72, unknown 541.5
2725 Female, age 75, unknown 468.3
2823 Male, age 76, right hemisphere 432.2
2769 Male, age 72, unknown 375.6
2588 Male, age 74, left hemisphere 364.8
2227 Male, age 72, unknown 362.5
2584 Male, age 75, left hemisphere 342.8
1865 Male, age 51, unknown 332.8
2785 Male, age 18, unknown 315.6
1821 Female, age 72, unknown 308.1
1904 Male, age 53, unknown 303.8
1954 Female, age 42, unknown 217.8
Substantia nigra
nTPM: 569.6
2699 Male, age 18, unknown 1073.0
1851 Male, age 51, unknown 773.1
2590 Female, age 75, unknown 599.3
2583 Male, age 75, right hemisphere 576.0
2409 Female, age 72, unknown 561.3
2665 Male, age 74, both hemispheres 522.9
1916 Female, age 42, unknown 482.0
1941 Male, age 53, unknown 441.0
1889 Female, age 72, unknown 350.4
2241 Male, age 72, unknown 317.3
Superior colliculus
nTPM: 728.9
1913 Female, age 42, unknown 1128.1
2664 Male, age 75, both hemispheres 1116.9
1995 Male, age 72, unknown 991.1
1796 Male, age 53, unknown 931.2
2087 Female, age 72, unknown 704.1
2587 Male, age 74, left hemisphere 610.5
1839 Male, age 51, unknown 575.5
2261 Male, age 18, unknown 537.2
2668 Female, age 75, unknown 411.7
1895 Male, age 76, right hemisphere 283.0
Ventral tegmental area
nTPM: 597.1
2021 Male, age 53, unknown 959.8
1915 Female, age 42, unknown 813.4
2223 Female, age 72, unknown 527.7
1942 Male, age 51, unknown 446.6
2218 Male, age 76, both hemispheres 419.6
2410 Female, age 72, unknown 415.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 707.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 707.2
Samples: 139

Max nTPM: 2762.4
Min nTPM: 100.8
Std nTPM: 454.8
Median nTPM: 601.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2762.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2180.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2141.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1975.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1595.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1580.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1556.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1553.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1547.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1442.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1414.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 754.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 754.1
FF:10158-103A5 76 years, female 754.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 139.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.7
Samples: 4

Max nTPM: 172.8
Min nTPM: 109.4
Sample A Male 132.0
Sample B Male 109.4
Sample C Female 172.8
Sample D Female 144.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74431465 Antisense, RP_060207_02_A08, Mouse strain C57BL/6J (56 days, male) 0.2

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