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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:716.1 nTPM
HPA Brain:564.8 nTPM
GTEx:716.1 nTPM
FANTOM5:654.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

564.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 564.8
2048 Male, age 55, midline 698.9
2565 Male, age 75, midline 621.3
1981 Female, age 72, midline 527.8
2816 Male, age 47, midline 523.9
2194 Female, age 79, both hemispheres 452.2
Cervical spinal cord, dorsal horn
nTPM: 421.0
2296 Male, age 66, both hemispheres 571.0
2173 Female, age 72, unknown 524.5
2069 Male, age 47, both hemispheres 420.3
1877 Male, age 55, unknown 409.1
2721 Male, age 90, both hemispheres 400.4
2297 Male, age 75, both hemispheres 201.0
Cervical spinal cord, ventral horn
nTPM: 514.3
2098 Female, age 72, unknown 770.2
2809 Male, age 90, both hemispheres 637.2
2295 Male, age 66, both hemispheres 519.5
2480 Male, age 75, both hemispheres 505.8
2068 Male, age 55, unknown 350.6
2820 Female, age 79, both hemispheres 302.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

716.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 716.1
Samples: 159

Max nTPM: 2316.7
Min nTPM: 115.2
Std nTPM: 333.7
Median nTPM: 649.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2316.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1949.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1711.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1675.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1524.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1487.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1468.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1321.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1226.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1200.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1198.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1182.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1130.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1127.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1117.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1105.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1105.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1079.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1074.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1074.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1069.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1064.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1064.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1044.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1031.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1030.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1018.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1011.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 979.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 975.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 975.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 973.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 947.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 944.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 942.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 937.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 909.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 905.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 896.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 881.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 875.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 864.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 852.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 835.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 827.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 822.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 817.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 812.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 809.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 797.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 793.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 791.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 790.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 784.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 773.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 765.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 755.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 747.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 747.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 740.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 736.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 736.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 731.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 730.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 721.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 717.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 697.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 696.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 683.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 682.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 679.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 674.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 673.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 669.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 669.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 659.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 656.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 651.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 650.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 649.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 645.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 643.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 632.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 624.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 622.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 617.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 616.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 615.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 614.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 606.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 603.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 602.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 601.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 587.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 574.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 570.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 569.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 564.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 560.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 558.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 556.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 554.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 545.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 545.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 545.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 542.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 535.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 533.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 532.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 520.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 520.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 516.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 515.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 511.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 506.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 503.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 503.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 503.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 500.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 490.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 490.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 490.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 481.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 476.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 473.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 468.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 467.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 466.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 466.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 463.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 459.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 458.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 456.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 451.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 448.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 442.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 440.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 423.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 422.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 419.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 410.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 406.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 388.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 381.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 377.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 366.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 342.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 312.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 305.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 298.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 295.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 284.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 282.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 282.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 243.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 242.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 172.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 115.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

654.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 654.1
FF:10159-103A6 76 years, female 810.6
FF:10181-103D1 60 years, female 497.5

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