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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:682.8 nTPM
HPA Brain:173.0 nTPM
GTEx:682.8 nTPM
FANTOM5:354.6 Scaled Tags Per Million
Pig:147.4 nTPM
Mouse:427.8 nTPM
Allen mouse:2.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.0
Sample id Sample description nTPM
Amygdala
nTPM: 161.9
2814 Male, age 76, right hemisphere 190.5
2514 Male, age 75, right hemisphere 167.4
2695 Female, age 67, right hemisphere 156.3
1987 Female, age 91, left hemisphere 148.7
2517 Female, age 94, left hemisphere 146.5
Basal amygdala
nTPM: 163.9
2243 Female, age 91, right hemisphere 190.1
1955 Male, age 76, both hemispheres 182.0
2110 Male, age 80, left hemisphere 181.2
2609 Male, age 75, right hemisphere 155.0
2685 Female, age 94, left hemisphere 144.7
2827 Female, age 67, right hemisphere 130.3
Central amygdala
nTPM: 157.1
2826 Female, age 94, left hemisphere 176.4
1905 Male, age 76, both hemispheres 174.4
2239 Male, age 80, left hemisphere 166.8
2701 Female, age 91, right hemisphere 143.6
2515 Male, age 75, right hemisphere 124.3
Corticomedial amygdala
nTPM: 173.0
2242 Female, age 91, right hemisphere 196.1
2829 Male, age 80, left hemisphere 189.0
2240 Male, age 76, both hemispheres 178.0
2535 Female, age 67, right hemisphere 176.0
2429 Female, age 94, left hemisphere 164.3
2428 Male, age 75, right hemisphere 134.8
Lateral amygdala
nTPM: 144.7
1883 Male, age 76, both hemispheres 195.6
2534 Female, age 94, left hemisphere 168.4
2516 Male, age 75, right hemisphere 143.5
2830 Female, age 67, right hemisphere 129.6
2256 Male, age 80, left hemisphere 119.4
2255 Female, age 91, right hemisphere 111.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

682.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 682.8
Samples: 152

Max nTPM: 2625.9
Min nTPM: 271.6
Std nTPM: 286.0
Median nTPM: 646.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2625.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2000.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1653.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1614.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1298.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1253.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1165.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1057.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1018.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 976.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 957.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 956.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 944.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 940.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 926.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 921.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 915.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 905.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 890.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 890.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 880.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 878.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 866.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 863.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 852.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 849.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 844.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 837.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 819.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 792.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 792.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 790.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 790.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 782.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 776.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 772.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 771.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 769.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 765.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 758.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 756.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 753.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 749.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 740.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 725.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 710.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 708.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 704.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 702.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 698.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 695.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 687.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 686.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 685.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 682.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 682.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 678.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 677.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 676.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 674.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 673.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 673.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 672.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 669.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 669.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 666.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 664.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 663.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 662.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 661.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 660.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 655.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 652.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 652.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 649.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 646.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 646.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 645.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 643.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 642.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 642.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 641.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 640.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 640.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 626.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 613.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 612.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 611.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 608.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 607.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 590.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 585.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 585.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 579.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 576.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 573.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 573.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 573.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 570.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 567.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 567.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 566.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 565.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 559.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 558.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 548.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 547.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 546.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 546.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 544.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 544.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 533.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 527.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 526.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 525.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 524.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 523.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 519.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 519.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 508.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 505.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 498.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 497.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 494.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 491.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 489.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 484.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 477.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 475.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 470.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 466.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 460.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 458.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 446.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 445.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 442.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 426.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 419.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 416.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 409.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 405.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 402.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 390.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 378.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 376.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 369.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 350.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 342.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 336.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 328.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 316.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 271.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 354.6
FF:10151-102I7 76 years, female 354.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.4
Pig sample Sample description nTPM
Amygdala
nTPM: 147.4
Samples: 4

Max nTPM: 194.6
Min nTPM: 108.7
Sample A Female 194.6
Sample B Female 152.1
Sample C Male 134.1
Sample D Male 108.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

427.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 427.8
Samples: 4

Max nTPM: 438.1
Min nTPM: 408.3
Sample A Male 408.3
Sample B Male 430.8
Sample C Female 438.1
Sample D Female 433.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.2
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 3.2
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 1.3

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