MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:502.5 nTPM
HPA Brain:177.1 nTPM
GTEx:502.5 nTPM
FANTOM5:237.5 Scaled Tags Per Million
Pig:218.9 nTPM
Mouse:441.0 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 177.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.1
1870 Female, age 42, unknown 163.3
2666 Male, age 74, left hemisphere 159.0
1827 Male, age 72, unknown 155.5
2828 Female, age 72, unknown 149.1
2019 Male, age 18, unknown 148.4
2219 Male, age 76, both hemispheres 137.5
1833 Male, age 53, unknown 134.8
1830 Male, age 51, unknown 120.3
2411 Female, age 72, unknown 116.6
2586 Male, age 75, left hemisphere 106.8
Dorsal raphe nucleus
nTPM: 136.0
1828 Male, age 53, unknown 150.4
2047 Male, age 72, unknown 143.9
2750 Male, age 76, both hemispheres 136.0
2298 Female, age 72, unknown 133.2
2016 Female, age 72, unknown 116.5
Inferior colliculus
nTPM: 142.6
1890 Male, age 53, unknown 155.0
2849 Male, age 72, unknown 141.1
1848 Female, age 42, unknown 137.5
2097 Female, age 72, unknown 136.7
Median raphe nucleus
nTPM: 177.1
2220 Male, age 76, midline 177.1
Periaquaductal grey, anterior
nTPM: 140.9
1795 Male, age 51, unknown 148.3
1947 Male, age 18, unknown 140.7
2502 Female, age 75, unknown 133.8
Periaquaductal grey, dorsal
nTPM: 127.0
2850 Male, age 76, both hemispheres 155.3
1840 Male, age 53, unknown 131.7
1831 Male, age 72, unknown 123.2
2464 Female, age 72, unknown 97.7
Periaquaductal grey, lateral
nTPM: 121.8
2140 Male, age 76, both hemispheres 131.2
2053 Male, age 18, unknown 120.7
2272 Male, age 74, both hemispheres 113.5
Pretectal area
nTPM: 161.5
1944 Female, age 72, unknown 215.1
2007 Male, age 72, unknown 198.8
1817 Female, age 42, unknown 195.0
1816 Male, age 51, unknown 186.8
2667 Female, age 75, unknown 167.7
1815 Male, age 53, unknown 162.6
2407 Male, age 75, both hemispheres 145.6
2224 Female, age 72, unknown 133.9
2825 Male, age 18, unknown 131.2
2273 Male, age 74, both hemispheres 120.4
2316 Male, age 76, right hemisphere 119.0
Red nucleus
nTPM: 139.6
2785 Male, age 18, unknown 167.7
2725 Female, age 75, unknown 164.8
2584 Male, age 75, left hemisphere 147.7
2823 Male, age 76, right hemisphere 142.6
1865 Male, age 51, unknown 141.9
2503 Female, age 72, unknown 140.1
2588 Male, age 74, left hemisphere 137.2
1821 Female, age 72, unknown 136.6
1954 Female, age 42, unknown 135.1
2769 Male, age 72, unknown 125.7
2227 Male, age 72, unknown 123.4
1904 Male, age 53, unknown 113.1
Substantia nigra
nTPM: 168.0
1916 Female, age 42, unknown 238.4
1889 Female, age 72, unknown 202.0
2665 Male, age 74, both hemispheres 175.9
2241 Male, age 72, unknown 174.2
1941 Male, age 53, unknown 170.9
1851 Male, age 51, unknown 162.3
2409 Female, age 72, unknown 156.9
2699 Male, age 18, unknown 147.4
2590 Female, age 75, unknown 128.6
2583 Male, age 75, right hemisphere 123.9
Superior colliculus
nTPM: 134.8
2087 Female, age 72, unknown 168.8
1796 Male, age 53, unknown 151.2
2668 Female, age 75, unknown 143.5
1895 Male, age 76, right hemisphere 142.0
2261 Male, age 18, unknown 140.0
2587 Male, age 74, left hemisphere 139.4
1913 Female, age 42, unknown 127.9
1839 Male, age 51, unknown 117.0
2664 Male, age 75, both hemispheres 111.1
1995 Male, age 72, unknown 107.4
Ventral tegmental area
nTPM: 144.9
1915 Female, age 42, unknown 167.1
2218 Male, age 76, both hemispheres 162.4
1942 Male, age 51, unknown 150.6
2223 Female, age 72, unknown 148.0
2410 Female, age 72, unknown 123.4
2021 Male, age 53, unknown 118.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 502.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 502.5
Samples: 139

Max nTPM: 950.5
Min nTPM: 289.0
Std nTPM: 130.8
Median nTPM: 476.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 950.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 903.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 857.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 803.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 801.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 791.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 764.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 735.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 733.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 731.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 722.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 237.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.5
FF:10158-103A5 76 years, female 237.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 218.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 187.2
Samples: 4

Max nTPM: 271.8
Min nTPM: 127.8
Sample A Female 271.8
Sample B Female 185.4
Sample C Male 163.6
Sample D Male 127.8
Midbrain
nTPM: 203.0
Samples: 4

Max nTPM: 230.6
Min nTPM: 182.3
Sample A Female 230.6
Sample B Female 202.3
Sample C Male 196.7
Sample D Male 182.3
Periaqueductal gray
nTPM: 158.6
Samples: 3

Max nTPM: 175.2
Min nTPM: 138.0
Sample B Female 175.2
Sample C Male 162.6
Sample D Male 138.0
Superior colliculi
nTPM: 219.0
Samples: 4

Max nTPM: 267.9
Min nTPM: 184.0
Sample A Female 267.9
Sample B Female 191.3
Sample C Male 232.6
Sample D Male 184.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 441.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 441.0
Samples: 4

Max nTPM: 472.7
Min nTPM: 389.1
Sample A Male 467.0
Sample B Male 435.1
Sample C Female 389.1
Sample D Female 472.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68076547 Antisense, RP_040923_02_F08, Mouse strain C57BL/6J (56 days, male) 1.5
70918976 Antisense, RP_050712_04_H06, Mouse strain C57BL/6J (56 days, male) 0.4

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