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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:403.7 nTPM
HPA Brain:130.9 nTPM
GTEx:403.7 nTPM
FANTOM5:628.8 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.9
Sample id Sample description nTPM
Amygdala
nTPM: 130.9
2814 Male, age 76, right hemisphere 172.8
2695 Female, age 67, right hemisphere 159.4
1987 Female, age 91, left hemisphere 121.6
2514 Male, age 75, right hemisphere 107.9
2517 Female, age 94, left hemisphere 92.8
Basal amygdala
nTPM: 88.1
2609 Male, age 75, right hemisphere 143.1
2110 Male, age 80, left hemisphere 104.5
1955 Male, age 76, both hemispheres 91.4
2243 Female, age 91, right hemisphere 75.7
2685 Female, age 94, left hemisphere 65.1
2827 Female, age 67, right hemisphere 48.9
Central amygdala
nTPM: 100.6
1905 Male, age 76, both hemispheres 130.7
2515 Male, age 75, right hemisphere 117.1
2239 Male, age 80, left hemisphere 87.9
2701 Female, age 91, right hemisphere 86.6
2826 Female, age 94, left hemisphere 80.6
Corticomedial amygdala
nTPM: 86.7
2428 Male, age 75, right hemisphere 135.1
2829 Male, age 80, left hemisphere 118.0
2429 Female, age 94, left hemisphere 89.8
2242 Female, age 91, right hemisphere 63.4
2240 Male, age 76, both hemispheres 60.1
2535 Female, age 67, right hemisphere 53.6
Lateral amygdala
nTPM: 84.0
1883 Male, age 76, both hemispheres 114.5
2516 Male, age 75, right hemisphere 111.5
2256 Male, age 80, left hemisphere 83.2
2255 Female, age 91, right hemisphere 73.0
2830 Female, age 67, right hemisphere 63.1
2534 Female, age 94, left hemisphere 58.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

403.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 403.7
Samples: 152

Max nTPM: 1262.0
Min nTPM: 73.2
Std nTPM: 225.4
Median nTPM: 347.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1262.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1223.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1161.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1141.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1043.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 958.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 860.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 815.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 804.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 797.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 784.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 771.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 709.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 702.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 695.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 681.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 672.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 661.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 650.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 648.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 643.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 629.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 626.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 623.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 610.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 604.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 596.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 579.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 569.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 542.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 539.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 517.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 504.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 504.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 501.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 498.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 492.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 491.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 489.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 488.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 488.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 486.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 473.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 471.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 463.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 463.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 456.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 455.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 455.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 455.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 447.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 442.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 438.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 437.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 433.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 421.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 419.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 416.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 415.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 401.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 398.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 396.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 394.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 392.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 392.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 389.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 387.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 384.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 382.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 379.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 366.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 364.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 357.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 356.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 352.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 350.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 343.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 340.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 339.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 337.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 327.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 326.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 326.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 322.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 322.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 318.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 317.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 311.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 311.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 310.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 302.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 297.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 296.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 294.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 285.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 284.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 282.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 279.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 279.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 276.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 273.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 273.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 272.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 270.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 269.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 269.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 268.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 266.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 264.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 261.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 259.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 257.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 256.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 251.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 243.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 240.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 235.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 230.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 226.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 226.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 222.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 221.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 217.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 214.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 205.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 204.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 202.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 201.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 201.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 197.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 185.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 183.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 181.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 178.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 169.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 165.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 165.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 163.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 160.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 160.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 147.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 142.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 137.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 136.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 73.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

628.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 628.8
FF:10151-102I7 76 years, female 628.8

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