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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:235.5 nTPM
HPA Brain:137.9 nTPM
GTEx:235.5 nTPM
FANTOM5:1499.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 114.3
2048 Male, age 55, midline 157.9
1981 Female, age 72, midline 148.9
2565 Male, age 75, midline 94.6
2194 Female, age 79, both hemispheres 86.8
2816 Male, age 47, midline 83.2
Cervical spinal cord, dorsal horn
nTPM: 105.1
2173 Female, age 72, unknown 137.4
2721 Male, age 90, both hemispheres 121.7
2069 Male, age 47, both hemispheres 109.8
1877 Male, age 55, unknown 107.5
2297 Male, age 75, both hemispheres 92.5
2296 Male, age 66, both hemispheres 61.6
Cervical spinal cord, ventral horn
nTPM: 137.9
2098 Female, age 72, unknown 205.2
2809 Male, age 90, both hemispheres 156.7
2480 Male, age 75, both hemispheres 154.9
2295 Male, age 66, both hemispheres 148.8
2068 Male, age 55, unknown 93.9
2820 Female, age 79, both hemispheres 68.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 235.5
Samples: 159

Max nTPM: 887.1
Min nTPM: 48.2
Std nTPM: 146.7
Median nTPM: 196.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 887.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 740.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 689.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 679.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 662.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 603.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 553.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 542.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 534.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 492.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 476.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 476.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 470.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 457.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 456.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 444.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 435.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 435.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 424.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 405.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 392.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 389.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 386.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 378.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 376.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 364.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 355.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 343.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 341.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 336.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 336.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 327.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 324.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 311.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 309.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 302.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 300.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 299.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 297.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 292.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 290.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 287.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 285.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 283.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 280.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 276.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 266.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 264.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 263.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 261.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 257.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 256.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 249.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 248.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 246.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 241.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 240.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 239.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 228.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 226.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 225.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 218.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 217.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 216.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 214.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 213.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 213.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 212.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 211.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 210.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 210.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 205.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 204.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 202.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 201.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 200.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 200.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 198.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 196.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 192.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 190.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 189.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 189.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 185.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 185.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 183.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 181.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 179.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 178.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 176.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 175.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 173.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 173.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 172.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 172.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 168.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 168.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 168.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 167.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 164.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 161.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 160.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 159.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 158.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 157.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 154.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 153.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 153.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 144.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 142.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 140.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 138.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 137.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 135.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 135.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 130.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 130.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 129.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 127.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 125.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 119.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 118.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 118.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 117.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 116.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 114.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 110.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 109.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 108.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 106.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 106.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 106.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 106.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 105.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 104.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 102.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 101.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 101.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 99.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 96.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 94.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 94.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 91.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 89.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 89.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 85.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 85.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 83.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 82.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 76.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 73.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 58.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 58.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 48.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1499.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1499.6
FF:10181-103D1 60 years, female 2027.8
FF:10159-103A6 76 years, female 971.3

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