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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

93.902
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:181.2 nTPM
HPA Brain:561.7 nTPM
GTEx:181.2 nTPM
FANTOM5:377.6 Scaled Tags Per Million
Pig:456.6 nTPM
Mouse:547.4 nTPM
Allen mouse:20.1 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA026918Antibody CAB013274Antibody CAB018389
Glial cells Not detectedMediumLow
Neuronal cells MediumHighHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA026918
Hippocampal formation mean intensity 93.902
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 42.233
Molecular layer of the dentate gyrus 39.716
Granular dentate gyrus 58.687
CA1 - oriens layer 47.029
CA1 - pyramidal layer 93.902
CA1 - radiatum layer 50.576
CA2 - oriens layer 30.427
CA2 - pyramidal layer 69.991
CA2 - radiatum layer 39.125
CA3 - oriens layer 24.840
CA3 - pyramidal layer 54.105
CA3 - radiatum layer 31.521
Stratum lucidum 33.277
Lacunosum moleculare 51.824
Subiculum 21.007

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

561.7
Sample id Sample description nTPM
Hippocampus
nTPM: 376.8
1898 Male, age 80, left hemisphere 585.1
2621 Female, age 67, right hemisphere 427.4
1855 Male, age 76, left hemisphere 398.9
2148 Female, age 91, left hemisphere 335.7
1911 Female, age 85, right hemisphere 271.5
2529 Female, age 94, left hemisphere 242.0
Dentate gyrus
nTPM: 394.2
1927 Female, age 91, both hemispheres 571.3
2010 Male, age 76, both hemispheres 433.2
2530 Female, age 94, left hemisphere 385.6
2246 Female, age 85, both hemispheres 344.1
2528 Male, age 74, both hemispheres 320.9
2531 Female, age 67, both hemispheres 310.2
Entorhinal gyrus
nTPM: 385.4
2764 Male, age 80, right hemisphere 489.6
1938 Female, age 85, left hemisphere 466.9
2613 Female, age 94, left hemisphere 425.1
1787 Male, age 76, left hemisphere 375.0
2686 Male, age 75, right hemisphere 302.9
2117 Female, age 91, right hemisphere 252.7
Hippocampus, CA1
nTPM: 463.0
2749 Male, age 80, left hemisphere 804.8
1873 Female, age 85, both hemispheres 459.7
2045 Male, age 76, both hemispheres 367.5
2527 Male, age 74, both hemispheres 357.3
2082 Female, age 91, right hemisphere 325.6
Hippocampus, CA2
nTPM: 416.6
1892 Male, age 76, both hemispheres 607.4
1963 Male, age 80, left hemisphere 585.7
1940 Female, age 85, left hemisphere 342.2
2249 Male, age 74, both hemispheres 329.2
2437 Female, age 94, left hemisphere 327.7
2113 Female, age 91, right hemisphere 307.4
Hippocampus, CA3
nTPM: 413.6
2137 Male, age 80, left hemisphere 613.2
1867 Male, age 76, both hemispheres 447.4
2620 Female, age 94, left hemisphere 379.4
2436 Male, age 74, both hemispheres 367.3
2861 Female, age 67, both hemispheres 365.3
1891 Female, age 85, both hemispheres 309.2
Parahippocampal cortex
nTPM: 422.9
1850 Male, age 80, both hemispheres 587.1
2245 Female, age 91, both hemispheres 495.0
1990 Female, age 91, right hemisphere 481.9
2250 Female, age 67, right hemisphere 458.8
1933 Female, age 85, both hemispheres 453.9
2532 Female, age 72, left hemisphere 427.7
2693 Female, age 94, both hemispheres 386.7
2622 Female, age 67, right hemisphere 347.5
2018 Male, age 76, both hemispheres 322.8
2692 Male, age 74, both hemispheres 268.1
Perirhinal gyrus
nTPM: 561.7
1847 Female, age 91, left hemisphere 770.2
1794 Male, age 80, right hemisphere 582.7
1841 Female, age 85, right hemisphere 525.8
2521 Female, age 94, right hemisphere 499.3
2848 Male, age 76, right hemisphere 430.3
Subiculum
nTPM: 324.5
1901 Male, age 80, both hemispheres 423.9
1977 Female, age 85, both hemispheres 411.1
2438 Female, age 94, left hemisphere 321.4
2619 Male, age 74, both hemispheres 286.1
2042 Male, age 76, both hemispheres 275.3
2729 Female, age 91, right hemisphere 229.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 181.2
Samples: 197

Max nTPM: 585.5
Min nTPM: 50.5
Std nTPM: 105.9
Median nTPM: 155.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 585.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 475.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 440.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 440.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 430.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 414.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 409.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 397.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 387.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 386.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 384.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 384.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 372.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 368.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 364.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 361.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 358.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 350.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 347.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 344.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 338.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 337.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 333.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 330.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 322.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 322.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 313.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 307.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 306.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 304.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 302.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 293.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 292.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 287.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 284.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 281.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 279.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 276.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 271.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 269.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 266.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 266.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 259.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 257.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 255.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 255.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 250.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 246.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 244.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 242.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 240.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 238.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 236.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 234.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 233.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 232.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 230.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 224.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 218.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 215.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 215.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 211.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 210.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 209.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 207.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 207.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 207.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 203.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 202.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 201.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 200.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 200.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 199.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 199.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 199.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 199.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 197.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 197.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 190.8
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 190.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 188.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 187.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 183.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 182.3
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 179.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 173.7
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 173.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 171.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 170.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 167.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 166.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 164.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 161.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 160.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 158.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 157.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 156.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 155.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 155.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 154.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 152.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 151.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 151.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 148.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 147.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 147.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 146.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 146.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 143.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 143.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 140.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 139.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 138.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 137.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 137.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 137.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 136.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 136.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 136.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 135.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 135.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 135.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 134.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 133.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 132.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 122.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 121.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 121.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 117.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 116.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 112.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 111.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 111.3
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 110.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 109.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 107.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 107.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 104.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 103.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 99.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 96.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 95.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 94.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 94.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 93.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 93.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 90.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 89.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 87.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 87.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 87.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 86.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 82.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 82.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 81.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 81.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 81.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 80.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 80.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 79.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 78.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 78.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 78.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 77.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 76.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 76.2
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 76.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 75.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 73.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 71.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 70.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 68.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 68.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 67.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 67.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 67.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 66.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 66.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 66.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 65.3
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 64.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 64.8
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 64.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 64.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 64.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 62.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 59.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 58.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 57.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 56.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 54.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 52.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 51.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 51.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 50.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 50.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

377.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 377.6
FF:10169-103B7 60 years, female 523.4
FF:10153-102I9 76 years, female 231.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

456.6
Pig sample Sample description nTPM
Subiculum
nTPM: 381.5
Samples: 4

Max nTPM: 474.3
Min nTPM: 338.2
Sample A Female 474.3
Sample B Female 338.2
Sample C Male 367.9
Sample D Male 345.5
Dorsal hippocampus
nTPM: 456.6
Samples: 4

Max nTPM: 612.6
Min nTPM: 335.1
Sample A Female 612.6
Sample B Female 517.4
Sample C Male 361.3
Sample D Male 335.1
Entorhinal cortex
nTPM: 384.8
Samples: 4

Max nTPM: 425.9
Min nTPM: 351.1
Sample A Female 425.9
Sample B Female 387.3
Sample C Male 374.7
Sample D Male 351.1
Ventral hippocampus
nTPM: 405.3
Samples: 4

Max nTPM: 468.5
Min nTPM: 269.0
Sample A Female 468.5
Sample B Female 269.0
Sample C Male 448.9
Sample D Male 434.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

547.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 547.4
Samples: 4

Max nTPM: 659.2
Min nTPM: 495.8
Sample A Male 495.8
Sample B Male 533.7
Sample C Female 501.0
Sample D Female 659.2
Hippocampal formation
nTPM: 530.2
Samples: 4

Max nTPM: 567.7
Min nTPM: 492.2
Sample A Male 492.2
Sample B Male 563.9
Sample C Female 567.7
Sample D Female 497.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 20.1
68443009 Antisense, RP_050111_01_B11, Mouse strain C57BL/6J (56 days, male) 26.7
1124 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 13.5
1125 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 12.9

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