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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

65.561
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:561.0 nTPM
FANTOM5:891.6 Scaled Tags Per Million
Pig:414.8 nTPM
Allen mouse:13.9 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA026918
Pons mean intensity 65.561
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 23.384
Parabrachial nucleus 24.095
Principle sensory trigeminal nucleus 13.604
Locus coeruleus 65.561
Pontine nucleus 9.042
Vestibular nucleus 19.972
Pontine reticular nucleus, oral 5.344
Lateral lemniscus 12.349
Superior paraolivary nucleus 18.102

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

561.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 252.7
2301 Female, age 85, both hemispheres 278.2
2188 Female, age 91, both hemispheres 266.1
1984 Male, age 76, both hemispheres 255.7
2090 Male, age 80, both hemispheres 210.8
Dorsal cochlear nucleus
nTPM: 260.8
2187 Female, age 91, both hemispheres 292.8
2058 Male, age 76, both hemispheres 284.2
2802 Male, age 74, right hemisphere 272.5
2370 Male, age 61, both hemispheres 257.8
2378 Male, age 80, both hemispheres 196.9
Dorsal tegmental nucleus
nTPM: 280.9
2083 Male, age 80, both hemispheres 328.9
1936 Male, age 76, left hemisphere 279.0
2326 Male, age 74, both hemispheres 259.3
2358 Male, age 61, both hemispheres 256.2
Dorsolateral tegmental area
nTPM: 265.1
2654 Male, age 80, both hemispheres 345.5
2751 Female, age 85, both hemispheres 290.6
2141 Male, age 76, both hemispheres 282.2
2360 Male, age 74, both hemispheres 239.1
2337 Male, age 61, both hemispheres 167.9
Kolliker-Fuse nucleus
nTPM: 352.6
2163 Male, age 80, both hemispheres 516.5
2793 Female, age 91, left hemisphere 320.7
2315 Male, age 76, right hemisphere 220.5
Lateral lemniscal nuclei
nTPM: 478.6
2169 Male, age 76, both hemispheres 591.2
2036 Male, age 80, both hemispheres 529.4
2453 Male, age 74, right hemisphere 510.7
2746 Female, age 85, left hemisphere 463.7
2320 Female, age 91, left hemisphere 298.2
Lateral parabrachial nucleus
nTPM: 344.6
2139 Female, age 85, right hemisphere 524.0
2790 Male, age 61, both hemispheres 340.5
2013 Male, age 80, both hemispheres 332.5
2792 Male, age 76, both hemispheres 181.3
Lateral vestibular nucleus
nTPM: 358.3
2184 Male, age 76, both hemispheres 459.0
2311 Male, age 80, both hemispheres 257.6
Locus coeruleus
nTPM: 495.7
2720 Male, age 74, both hemispheres 629.8
2123 Female, age 91, both hemispheres 613.0
2014 Male, age 55, unknown 545.6
2317 Female, age 72, unknown 435.9
2788 Male, age 74, unknown 431.9
1980 Male, age 76, both hemispheres 413.6
2162 Male, age 80, both hemispheres 399.8
Medial parabrachial nucleus
nTPM: 315.0
2854 Male, age 80, both hemispheres 381.0
2156 Male, age 61, both hemispheres 355.3
2170 Female, age 91, both hemispheres 312.1
2786 Male, age 76, both hemispheres 287.5
2463 Female, age 85, right hemisphere 239.0
Medial periolivary nuclei
nTPM: 451.7
2171 Female, age 85, both hemispheres 701.4
2063 Male, age 76, both hemispheres 613.1
2791 Male, age 74, right hemisphere 416.9
2081 Male, age 80, both hemispheres 281.1
2458 Female, age 91, both hemispheres 246.0
Motor facial nucleus
nTPM: 439.1
2062 Male, age 76, both hemispheres 641.4
2365 Male, age 74, right hemisphere 496.2
2327 Male, age 80, both hemispheres 452.5
2697 Female, age 85, both hemispheres 431.6
2126 Male, age 61, both hemispheres 335.6
2795 Female, age 91, both hemispheres 277.6
Motor trigeminal nucleus
nTPM: 339.4
2079 Male, age 80, both hemispheres 455.5
2560 Male, age 74, both hemispheres 363.4
2309 Male, age 76, both hemispheres 320.0
2335 Male, age 61, both hemispheres 306.0
2321 Female, age 91, both hemispheres 252.1
Nuclei of the trapezoid body
nTPM: 522.5
2159 Male, age 61, both hemispheres 722.5
2735 Female, age 85, both hemispheres 678.0
1983 Male, age 76, both hemispheres 549.9
2166 Male, age 80, both hemispheres 389.5
2368 Female, age 91, both hemispheres 272.4
Nucleus raphe magnus
nTPM: 561.0
2160 Male, age 61, both hemispheres 872.4
2172 Female, age 85, both hemispheres 719.0
2455 Male, age 74, both hemispheres 630.0
2328 Male, age 80, both hemispheres 427.3
2051 Male, age 76, both hemispheres 414.3
2459 Female, age 91, both hemispheres 302.8
Paramedian reticular nucleus
nTPM: 454.8
2050 Female, age 85, both hemispheres 588.3
2313 Male, age 61, both hemispheres 467.0
2057 Male, age 80, both hemispheres 461.9
2052 Male, age 76, both hemispheres 302.3
Pedunculopontine tegmental nucleus
nTPM: 324.3
1921 Female, age 85, both hemispheres 356.5
2334 Male, age 80, both hemispheres 337.5
2338 Male, age 61, both hemispheres 278.9
Pontine nuclei
nTPM: 538.9
2727 Male, age 61, right hemisphere 801.1
1863 Male, age 55, unknown 704.5
2787 Female, age 85, both hemispheres 681.7
2109 Female, age 72, unknown 586.2
1968 Male, age 76, left hemisphere 517.8
2454 Male, age 74, left hemisphere 431.4
2115 Male, age 80, left hemisphere 309.2
2319 Female, age 91, both hemispheres 279.2
Pontine raphe nucleus
nTPM: 456.3
2122 Female, age 85, midline 569.0
2853 Male, age 76, midline 343.7
Posteroventral cochlear nucleus
nTPM: 268.7
2752 Female, age 85, both hemispheres 456.8
2070 Male, age 76, both hemispheres 334.1
2371 Male, age 61, both hemispheres 233.5
2341 Male, age 80, both hemispheres 171.5
2135 Female, age 91, both hemispheres 147.5
Principal sensory trigeminal nucleus
nTPM: 484.6
2158 Male, age 61, both hemispheres 706.6
2008 Male, age 80, left hemisphere 552.5
2324 Male, age 76, both hemispheres 393.3
2367 Female, age 91, left hemisphere 285.8
Reticular pontine nucleus, caudal
nTPM: 366.8
2332 Male, age 80, right hemisphere 472.2
2092 Male, age 76, both hemispheres 420.0
2559 Male, age 74, both hemispheres 318.1
2457 Female, age 91, both hemispheres 257.0
Reticular pontine nucleus, oral
nTPM: 377.0
2012 Female, age 85, both hemispheres 504.9
2361 Male, age 74, both hemispheres 502.7
1939 Male, age 80, both hemispheres 325.7
2167 Male, age 76, both hemispheres 289.0
2366 Female, age 91, both hemispheres 262.5
Reticulotegmental nucleus
nTPM: 363.7
2325 Male, age 76, both hemispheres 462.9
2452 Male, age 74, both hemispheres 359.5
2333 Male, age 80, both hemispheres 326.4
2322 Female, age 91, both hemispheres 306.1
Spinal trigeminal nucleus, oral
nTPM: 382.9
2737 Female, age 85, both hemispheres 427.5
2164 Male, age 80, both hemispheres 424.5
1978 Male, age 76, both hemispheres 296.6
Subcoeruleus area
nTPM: 363.5
1958 Male, age 80, both hemispheres 449.2
2089 Male, age 76, left hemisphere 425.8
2323 Female, age 91, left hemisphere 420.8
2451 Male, age 74, both hemispheres 279.0
2369 Female, age 85, left hemisphere 242.5
Superior olive
nTPM: 443.9
1875 Female, age 85, both hemispheres 662.0
2364 Male, age 74, right hemisphere 439.3
2020 Male, age 76, both hemispheres 427.1
2329 Male, age 80, right hemisphere 377.2
2561 Female, age 91, both hemispheres 314.1
Ventral periolivary nuclei
nTPM: 474.8
2130 Female, age 85, both hemispheres 601.5
2165 Male, age 80, both hemispheres 524.6
2023 Male, age 76, both hemispheres 408.7
2794 Female, age 91, left hemisphere 364.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 379.8
2449 Male, age 74, both hemispheres 547.5
2840 Female, age 85, both hemispheres 431.0
1959 Male, age 76, both hemispheres 422.0
2161 Male, age 80, both hemispheres 368.2
2359 Male, age 61, both hemispheres 303.2
2456 Female, age 91, both hemispheres 206.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

891.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 429.1
FF:10182-103D2 60 years, female 588.4
FF:10165-103B3 76 years, female 269.9
Pons
Scaled Tags Per Million: 891.6
FF:10033-101E6 18-54 years, mixed 891.6

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.8
Pig sample Sample description nTPM
Pons
nTPM: 414.8
Samples: 4

Max nTPM: 529.2
Min nTPM: 302.1
Sample A Female 529.2
Sample B Female 302.1
Sample C Male 388.1
Sample D Male 439.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 13.9
68443009 Antisense, RP_050111_01_B11, Mouse strain C57BL/6J (56 days, male) 15.4
1124 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 12.4
1125 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 8.1

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