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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

43.834
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:519.2 nTPM
FANTOM5:249.8 Scaled Tags Per Million
Pig:277.4 nTPM
Allen mouse:13.8 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA026918
Medulla oblongata mean intensity 43.834
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 37.104
Raphe magnus nucleus 22.792
Cochlear nucleus 14.368
Lateral paragigantocellular nucleus 11.370
Raphe pallidus nucleus 6.578
Facial nucleus 21.004
Hypoglossal nucleus 10.942
Ambiguus nucleus 40.886
External cuneate nucleus 27.133
Inferior olivary nucleus 35.090
Raphe obscures nucleus 31.884
Dorsal motor nucleus of vagus 43.834

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

519.2
Sample id Sample description nTPM
Area postrema
nTPM: 165.9
2054 Male, age 76, both hemispheres 252.1
2799 Male, age 61, both hemispheres 141.1
2306 Male, age 80, both hemispheres 104.5
Dorsal medullary reticular nucleus
nTPM: 362.3
2040 Female, age 85, both hemispheres 574.8
2373 Male, age 61, both hemispheres 263.0
2088 Male, age 76, both hemispheres 249.1
Dorsal motor vagal complex
nTPM: 284.8
2133 Female, age 91, both hemispheres 512.4
2000 Male, age 74, unknown 432.7
2844 Male, age 55, unknown 318.1
2813 Female, age 72, unknown 282.5
2643 Male, age 74, both hemispheres 195.2
2797 Male, age 61, both hemispheres 187.4
2185 Male, age 76, both hemispheres 175.8
2807 Female, age 85, both hemispheres 174.6
Gigantocellular reticular nuclei, medullary
nTPM: 348.6
2462 Male, age 74, both hemispheres 548.6
1876 Female, age 85, both hemispheres 389.0
2022 Male, age 76, right hemisphere 345.0
2310 Male, age 80, both hemispheres 335.9
2387 Female, age 91, both hemispheres 262.4
2314 Male, age 61, both hemispheres 210.7
Gigantocellular reticular nuclei, pars
nTPM: 385.6
2168 Male, age 76, both hemispheres 571.4
2084 Female, age 85, both hemispheres 436.9
2336 Male, age 61, both hemispheres 351.8
2706 Male, age 80, both hemispheres 286.4
2330 Male, age 80, both hemispheres 281.7
Inferior olive
nTPM: 185.4
2085 Female, age 85, both hemispheres 226.4
2563 Male, age 74, both hemispheres 206.9
2628 Female, age 91, both hemispheres 193.5
2178 Male, age 61, both hemispheres 168.4
2379 Male, age 80, both hemispheres 132.1
Lateral medullary reticular nucleus
nTPM: 272.6
2044 Male, age 76, both hemispheres 476.5
2305 Male, age 74, both hemispheres 263.9
2804 Female, age 91, both hemispheres 254.6
2190 Female, age 85, both hemispheres 245.5
2374 Male, age 61, both hemispheres 214.4
2852 Male, age 80, both hemispheres 180.6
Medial olivary nucleus
nTPM: 161.9
2851 Male, age 80, both hemispheres 196.1
1962 Male, age 76, both hemispheres 164.8
2138 Female, age 91, both hemispheres 147.4
1943 Male, age 61, both hemispheres 139.2
Medial vestibular nucleus
nTPM: 421.5
2134 Male, age 76, both hemispheres 488.6
2803 Female, age 91, both hemispheres 430.2
2093 Male, age 80, both hemispheres 429.7
2801 Male, age 74, both hemispheres 406.6
2743 Female, age 85, both hemispheres 396.1
2624 Male, age 61, both hemispheres 377.7
Motor hypoglossal nucleus
nTPM: 373.5
2132 Female, age 85, both hemispheres 460.8
2125 Female, age 91, both hemispheres 460.3
2461 Male, age 61, both hemispheres 428.7
2182 Male, age 80, both hemispheres 270.8
2277 Male, age 76, both hemispheres 246.8
Nucleus ambiguus
nTPM: 311.2
2096 Female, age 85, both hemispheres 450.3
2071 Male, age 76, both hemispheres 172.0
Nucleus cuneatus
nTPM: 231.5
2131 Male, age 76, both hemispheres 366.9
2100 Male, age 76, both hemispheres 284.9
2376 Male, age 61, both hemispheres 275.4
2564 Male, age 74, both hemispheres 265.9
2562 Male, age 61, both hemispheres 264.6
2381 Male, age 80, both hemispheres 201.8
2805 Female, age 91, both hemispheres 160.8
2808 Female, age 85, both hemispheres 138.2
2380 Male, age 80, both hemispheres 124.6
Nucleus gracilis
nTPM: 148.8
2627 Male, age 74, both hemispheres 217.0
2382 Male, age 80, both hemispheres 126.7
2299 Female, age 85, both hemispheres 102.8
Nucleus raphe obscurus
nTPM: 217.3
2800 Male, age 61, midline 296.5
2845 Female, age 85, midline 249.8
2142 Male, age 76, midline 105.7
Nucleus raphe pallidus
nTPM: 262.8
2183 Male, age 80, midline 376.6
1924 Male, age 61, midline 290.8
2145 Male, age 76, midline 121.1
Nucleus tractus solitarii
nTPM: 295.2
2144 Female, age 91, right hemisphere 439.6
2656 Male, age 76, both hemispheres 283.3
2191 Female, age 85, both hemispheres 252.8
2307 Male, age 80, both hemispheres 205.0
Parvicellular reticular nuclei
nTPM: 394.9
2558 Male, age 74, both hemispheres 446.1
2119 Male, age 80, both hemispheres 378.7
2095 Male, age 76, both hemispheres 359.9
Parvicellular reticular nuclei, medullary
nTPM: 419.0
2189 Female, age 91, both hemispheres 479.1
2091 Female, age 85, both hemispheres 432.0
2181 Male, age 80, left hemisphere 345.7
Peritrigeminal nucleus
nTPM: 365.5
2179 Male, age 61, both hemispheres 410.9
2136 Male, age 76, both hemispheres 362.1
2067 Female, age 85, both hemispheres 323.5
Prepositus hypoglossal nucleus
nTPM: 334.4
2855 Female, age 85, right hemisphere 396.6
2086 Male, age 80, both hemispheres 272.3
Spinal trigeminal nucleus, caudal
nTPM: 366.9
2390 Female, age 91, both hemispheres 696.4
2447 Male, age 76, both hemispheres 373.3
2642 Male, age 74, both hemispheres 271.8
2312 Male, age 61, both hemispheres 248.6
2308 Male, age 80, both hemispheres 244.6
Spinal trigeminal nucleus, interpolar
nTPM: 519.2
2625 Male, age 61, both hemispheres 751.7
2066 Male, age 76, right hemisphere 613.8
2389 Female, age 91, both hemispheres 436.9
2033 Male, age 80, both hemispheres 405.4
2386 Female, age 85, both hemispheres 388.4
Spinal vestibular nucleus
nTPM: 362.8
2186 Female, age 91, both hemispheres 456.8
2780 Male, age 80, both hemispheres 394.3
2806 Female, age 85, both hemispheres 374.1
2796 Male, age 61, both hemispheres 343.5
2748 Male, age 76, both hemispheres 321.5
2384 Male, age 74, both hemispheres 286.5
Superior vestibular nucleus
nTPM: 280.7
2015 Male, age 80, both hemispheres 343.6
2061 Male, age 76, both hemispheres 262.8
2383 Male, age 74, both hemispheres 235.8
Ventral medullary reticular nucleus
nTPM: 279.0
2060 Male, age 76, both hemispheres 327.5
2372 Male, age 61, both hemispheres 230.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 318.1
2741 Female, age 85, both hemispheres 423.7
1986 Male, age 76, both hemispheres 392.7
2180 Male, age 61, both hemispheres 305.7
2302 Female, age 91, both hemispheres 268.4
2118 Male, age 80, both hemispheres 200.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

249.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 249.8
FF:10038-101F2 18-64 years, mixed 398.3
FF:10155-103A2 76 years, female 180.8
FF:10174-103C3 60 years, female 170.2

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 277.4
Samples: 4

Max nTPM: 323.6
Min nTPM: 175.1
Sample A Female 323.6
Sample B Female 306.4
Sample C Male 304.5
Sample D Male 175.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 13.8
68443009 Antisense, RP_050111_01_B11, Mouse strain C57BL/6J (56 days, male) 15.8
1124 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 11.8
1125 Antisense, RP_Baylor_103127, Mouse strain C57BL/6J (56 days, male) 9.2

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