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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:424.7 nTPM
HPA Brain:551.2 nTPM
GTEx:424.7 nTPM
FANTOM5:337.1 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:586.6 nTPM
Allen mouse:15.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

551.2
Sample id Sample description nTPM
Amygdala
nTPM: 493.1
2695 Female, age 67, right hemisphere 684.8
2814 Male, age 76, right hemisphere 542.2
2517 Female, age 94, left hemisphere 450.8
2514 Male, age 75, right hemisphere 409.5
1987 Female, age 91, left hemisphere 378.4
Basal amygdala
nTPM: 471.4
2827 Female, age 67, right hemisphere 523.5
2609 Male, age 75, right hemisphere 512.1
2243 Female, age 91, right hemisphere 510.4
2110 Male, age 80, left hemisphere 478.0
1955 Male, age 76, both hemispheres 425.3
2685 Female, age 94, left hemisphere 378.9
Central amygdala
nTPM: 494.9
2826 Female, age 94, left hemisphere 645.5
1905 Male, age 76, both hemispheres 538.1
2515 Male, age 75, right hemisphere 462.0
2239 Male, age 80, left hemisphere 453.2
2701 Female, age 91, right hemisphere 375.7
Corticomedial amygdala
nTPM: 417.6
2829 Male, age 80, left hemisphere 480.4
2428 Male, age 75, right hemisphere 465.1
2535 Female, age 67, right hemisphere 414.7
2242 Female, age 91, right hemisphere 400.1
2429 Female, age 94, left hemisphere 376.5
2240 Male, age 76, both hemispheres 368.9
Lateral amygdala
nTPM: 551.2
2830 Female, age 67, right hemisphere 752.4
2534 Female, age 94, left hemisphere 652.3
2516 Male, age 75, right hemisphere 564.9
1883 Male, age 76, both hemispheres 482.0
2255 Female, age 91, right hemisphere 468.1
2256 Male, age 80, left hemisphere 387.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 424.7
Samples: 152

Max nTPM: 908.8
Min nTPM: 213.8
Std nTPM: 115.3
Median nTPM: 413.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 908.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 804.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 717.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 679.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 670.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 655.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 647.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 636.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 633.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 598.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 597.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 595.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 594.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 590.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 588.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 586.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 573.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 572.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 549.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 548.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 543.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 541.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 532.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 526.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 519.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 518.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 517.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 515.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 515.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 514.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 514.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 508.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 499.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 497.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 497.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 491.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 488.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 486.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 486.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 480.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 479.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 475.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 474.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 472.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 471.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 469.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 468.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 464.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 462.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 461.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 455.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 455.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 454.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 451.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 443.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 442.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 442.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 442.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 442.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 442.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 441.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 440.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 440.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 438.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 437.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 436.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 429.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 426.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 424.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 424.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 422.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 421.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 420.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 420.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 414.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 413.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 409.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 407.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 405.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 402.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 402.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 402.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 401.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 397.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 397.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 395.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 395.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 394.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 391.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 388.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 387.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 384.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 384.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 383.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 381.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 377.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 376.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 376.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 375.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 374.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 365.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 364.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 359.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 358.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 353.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 353.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 349.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 349.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 348.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 347.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 346.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 346.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 345.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 344.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 342.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 341.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 340.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 340.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 336.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 326.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 324.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 323.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 322.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 320.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 316.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 314.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 311.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 309.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 308.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 306.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 304.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 302.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 299.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 292.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 291.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 288.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 286.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 283.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 282.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 282.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 280.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 267.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 266.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 263.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 261.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 259.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 248.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 242.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 218.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 216.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 213.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

337.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 337.1
FF:10151-102I7 76 years, female 337.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.9
Pig sample Sample description nTPM
Amygdala
nTPM: 29.0
Samples: 4

Max nTPM: 39.4
Min nTPM: 24.4
Sample A Female 39.4
Sample B Female 24.4
Sample C Male 26.3
Sample D Male 25.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 586.6
Samples: 4

Max nTPM: 640.9
Min nTPM: 533.5
Sample A Male 570.4
Sample B Male 533.5
Sample C Female 640.9
Sample D Female 601.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.0
167 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 15.0
166 Antisense, RP_Baylor_102648, Mouse strain C57BL/6J (56 days, male) 14.0

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