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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
444.9
nTPM
FANTOM5:
481.5
Scaled Tags Per Million
Pig:
49.6
nTPM
Allen mouse:
12.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
444.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 319.2
2090
Male, age 80, both hemispheres
334.0
2301
Female, age 85, both hemispheres
326.9
1984
Male, age 76, both hemispheres
317.4
2188
Female, age 91, both hemispheres
298.6
Dorsal cochlear nucleus nTPM: 392.4
2802
Male, age 74, right hemisphere
529.4
2058
Male, age 76, both hemispheres
395.0
2378
Male, age 80, both hemispheres
372.2
2187
Female, age 91, both hemispheres
341.5
2370
Male, age 61, both hemispheres
323.9
Dorsal tegmental nucleus nTPM: 374.2
2083
Male, age 80, both hemispheres
422.6
2326
Male, age 74, both hemispheres
389.6
1936
Male, age 76, left hemisphere
355.5
2358
Male, age 61, both hemispheres
329.3
Dorsolateral tegmental area nTPM: 361.2
2751
Female, age 85, both hemispheres
443.6
2654
Male, age 80, both hemispheres
386.8
2141
Male, age 76, both hemispheres
366.5
2337
Male, age 61, both hemispheres
326.0
2360
Male, age 74, both hemispheres
283.1
Kolliker-Fuse nucleus nTPM: 338.1
2163
Male, age 80, both hemispheres
382.3
2315
Male, age 76, right hemisphere
322.8
2793
Female, age 91, left hemisphere
309.0
Lateral lemniscal nuclei nTPM: 382.1
2453
Male, age 74, right hemisphere
454.5
2169
Male, age 76, both hemispheres
383.1
2036
Male, age 80, both hemispheres
373.5
2320
Female, age 91, left hemisphere
353.6
2746
Female, age 85, left hemisphere
345.7
Lateral parabrachial nucleus nTPM: 308.8
2139
Female, age 85, right hemisphere
383.1
2013
Male, age 80, both hemispheres
307.1
2790
Male, age 61, both hemispheres
285.6
2792
Male, age 76, both hemispheres
259.6
Lateral vestibular nucleus nTPM: 375.5
2184
Male, age 76, both hemispheres
432.2
2311
Male, age 80, both hemispheres
318.8
Locus coeruleus nTPM: 338.0
2123
Female, age 91, both hemispheres
412.2
1980
Male, age 76, both hemispheres
355.3
2162
Male, age 80, both hemispheres
353.0
2317
Female, age 72, unknown
342.9
2014
Male, age 55, unknown
324.5
2720
Male, age 74, both hemispheres
309.0
2788
Male, age 74, unknown
269.4
Medial parabrachial nucleus nTPM: 377.3
2463
Female, age 85, right hemisphere
434.6
2170
Female, age 91, both hemispheres
396.9
2786
Male, age 76, both hemispheres
390.7
2854
Male, age 80, both hemispheres
345.2
2156
Male, age 61, both hemispheres
319.1
Medial periolivary nuclei nTPM: 348.8
2063
Male, age 76, both hemispheres
423.2
2171
Female, age 85, both hemispheres
417.0
2081
Male, age 80, both hemispheres
325.3
2458
Female, age 91, both hemispheres
302.8
2791
Male, age 74, right hemisphere
275.7
Motor facial nucleus nTPM: 371.3
2062
Male, age 76, both hemispheres
438.0
2795
Female, age 91, both hemispheres
404.6
2126
Male, age 61, both hemispheres
388.5
2327
Male, age 80, both hemispheres
367.5
2365
Male, age 74, right hemisphere
330.2
2697
Female, age 85, both hemispheres
299.1
Motor trigeminal nucleus nTPM: 375.9
2560
Male, age 74, both hemispheres
420.7
2309
Male, age 76, both hemispheres
393.4
2079
Male, age 80, both hemispheres
374.5
2335
Male, age 61, both hemispheres
355.5
2321
Female, age 91, both hemispheres
335.2
Nuclei of the trapezoid body nTPM: 402.7
2159
Male, age 61, both hemispheres
451.5
1983
Male, age 76, both hemispheres
445.8
2735
Female, age 85, both hemispheres
419.4
2166
Male, age 80, both hemispheres
349.6
2368
Female, age 91, both hemispheres
347.1
Nucleus raphe magnus nTPM: 385.6
2160
Male, age 61, both hemispheres
421.3
2172
Female, age 85, both hemispheres
414.2
2455
Male, age 74, both hemispheres
412.5
2328
Male, age 80, both hemispheres
388.0
2459
Female, age 91, both hemispheres
350.2
2051
Male, age 76, both hemispheres
327.6
Paramedian reticular nucleus nTPM: 334.5
2050
Female, age 85, both hemispheres
379.1
2057
Male, age 80, both hemispheres
368.7
2313
Male, age 61, both hemispheres
334.5
2052
Male, age 76, both hemispheres
255.6
Pedunculopontine tegmental nucleus nTPM: 337.3
1921
Female, age 85, both hemispheres
362.0
2334
Male, age 80, both hemispheres
348.1
2338
Male, age 61, both hemispheres
301.8
Pontine nuclei nTPM: 400.6
1863
Male, age 55, unknown
474.7
2787
Female, age 85, both hemispheres
456.2
1968
Male, age 76, left hemisphere
425.0
2109
Female, age 72, unknown
405.8
2454
Male, age 74, left hemisphere
405.1
2727
Male, age 61, right hemisphere
375.3
2115
Male, age 80, left hemisphere
338.5
2319
Female, age 91, both hemispheres
324.1
Pontine raphe nucleus nTPM: 402.5
2122
Female, age 85, midline
422.7
2853
Male, age 76, midline
382.4
Posteroventral cochlear nucleus nTPM: 317.9
2752
Female, age 85, both hemispheres
358.1
2371
Male, age 61, both hemispheres
340.7
2070
Male, age 76, both hemispheres
339.5
2341
Male, age 80, both hemispheres
292.6
2135
Female, age 91, both hemispheres
258.4
Principal sensory trigeminal nucleus nTPM: 374.8
2158
Male, age 61, both hemispheres
434.7
2324
Male, age 76, both hemispheres
391.1
2008
Male, age 80, left hemisphere
366.7
2367
Female, age 91, left hemisphere
306.5
Reticular pontine nucleus, caudal nTPM: 391.1
2559
Male, age 74, both hemispheres
430.4
2332
Male, age 80, right hemisphere
429.1
2457
Female, age 91, both hemispheres
353.0
2092
Male, age 76, both hemispheres
351.9
Reticular pontine nucleus, oral nTPM: 390.2
2167
Male, age 76, both hemispheres
454.3
2012
Female, age 85, both hemispheres
402.7
1939
Male, age 80, both hemispheres
385.1
2366
Female, age 91, both hemispheres
357.0
2361
Male, age 74, both hemispheres
351.9
Reticulotegmental nucleus nTPM: 444.9
2452
Male, age 74, both hemispheres
550.2
2333
Male, age 80, both hemispheres
442.1
2325
Male, age 76, both hemispheres
416.4
2322
Female, age 91, both hemispheres
370.8
Spinal trigeminal nucleus, oral nTPM: 361.8
2164
Male, age 80, both hemispheres
404.3
1978
Male, age 76, both hemispheres
355.6
2737
Female, age 85, both hemispheres
325.6
Subcoeruleus area nTPM: 382.5
2369
Female, age 85, left hemisphere
455.5
2451
Male, age 74, both hemispheres
401.0
2323
Female, age 91, left hemisphere
361.5
2089
Male, age 76, left hemisphere
354.1
1958
Male, age 80, both hemispheres
340.5
Superior olive nTPM: 323.3
2329
Male, age 80, right hemisphere
353.1
1875
Female, age 85, both hemispheres
334.5
2020
Male, age 76, both hemispheres
325.1
2561
Female, age 91, both hemispheres
316.9
2364
Male, age 74, right hemisphere
286.9
Ventral periolivary nuclei nTPM: 365.2
2130
Female, age 85, both hemispheres
445.3
2165
Male, age 80, both hemispheres
414.4
2023
Male, age 76, both hemispheres
309.5
2794
Female, age 91, left hemisphere
291.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 350.8
2456
Female, age 91, both hemispheres
389.4
2840
Female, age 85, both hemispheres
367.9
2161
Male, age 80, both hemispheres
365.5
2449
Male, age 74, both hemispheres
362.7
1959
Male, age 76, both hemispheres
309.8
2359
Male, age 61, both hemispheres
309.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.6
Pig sample
Sample description
nTPM
Pons nTPM: 49.6
Samples: 4
Max nTPM: 66.6
Min nTPM: 37.8
Sample A
Female
66.6
Sample B
Female
37.8
Sample C
Male
43.5
Sample D
Male
50.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
