We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
EIF1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • EIF1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:264.0 nTPM
HPA Brain:342.2 nTPM
GTEx:264.0 nTPM
FANTOM5:880.8 Scaled Tags Per Million
Pig:201.2 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.2
Sample id Sample description nTPM
Amygdala
nTPM: 342.2
2814 Male, age 76, right hemisphere 374.1
2695 Female, age 67, right hemisphere 363.3
2514 Male, age 75, right hemisphere 348.8
2517 Female, age 94, left hemisphere 313.9
1987 Female, age 91, left hemisphere 311.0
Basal amygdala
nTPM: 282.9
2609 Male, age 75, right hemisphere 353.6
2685 Female, age 94, left hemisphere 306.1
2827 Female, age 67, right hemisphere 281.7
2110 Male, age 80, left hemisphere 272.8
2243 Female, age 91, right hemisphere 246.7
1955 Male, age 76, both hemispheres 236.5
Central amygdala
nTPM: 324.4
2826 Female, age 94, left hemisphere 408.0
2515 Male, age 75, right hemisphere 350.1
1905 Male, age 76, both hemispheres 303.2
2239 Male, age 80, left hemisphere 287.3
2701 Female, age 91, right hemisphere 273.1
Corticomedial amygdala
nTPM: 251.3
2829 Male, age 80, left hemisphere 295.8
2428 Male, age 75, right hemisphere 273.1
2242 Female, age 91, right hemisphere 266.7
2240 Male, age 76, both hemispheres 245.7
2429 Female, age 94, left hemisphere 223.2
2535 Female, age 67, right hemisphere 203.5
Lateral amygdala
nTPM: 293.3
2516 Male, age 75, right hemisphere 325.2
2256 Male, age 80, left hemisphere 314.0
2534 Female, age 94, left hemisphere 303.7
2830 Female, age 67, right hemisphere 274.4
1883 Male, age 76, both hemispheres 272.3
2255 Female, age 91, right hemisphere 270.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 264.0
Samples: 152

Max nTPM: 518.8
Min nTPM: 126.7
Std nTPM: 73.2
Median nTPM: 247.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 518.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 503.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 498.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 485.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 474.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 457.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 422.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 421.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 412.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 411.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 401.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 396.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 387.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 365.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 350.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 349.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 347.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 344.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 342.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 340.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 336.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 332.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 331.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 328.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 325.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 316.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 315.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 313.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 311.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 309.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 308.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 307.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 307.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 306.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 306.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 304.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 301.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 298.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 291.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 288.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 287.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 286.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 284.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 281.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 280.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 279.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 278.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 278.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 276.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 275.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 270.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 268.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 268.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 267.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 265.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 265.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 264.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 264.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 261.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 261.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 261.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 261.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 261.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 259.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 259.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 258.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 257.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 256.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 256.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 254.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 252.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 251.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 250.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 250.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 250.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 247.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 247.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 247.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 247.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 247.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 247.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 246.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 245.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 241.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 240.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 240.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 239.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 239.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 239.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 238.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 237.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 235.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 233.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 233.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 232.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 231.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 230.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 229.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 228.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 228.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 227.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 227.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 226.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 225.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 223.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 222.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 222.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 220.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 220.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 219.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 217.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 216.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 213.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 212.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 211.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 210.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 210.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 210.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 210.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 208.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 208.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 206.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 205.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 202.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 201.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 201.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 201.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 197.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 197.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 197.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 196.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 191.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 190.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 189.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 187.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 185.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 183.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 183.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 180.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 178.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 173.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 172.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 167.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 165.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 162.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 155.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 155.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 126.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

880.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 880.8
FF:10151-102I7 76 years, female 880.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.2
Pig sample Sample description nTPM
Amygdala
nTPM: 201.2
Samples: 4

Max nTPM: 257.8
Min nTPM: 169.0
Sample A Female 257.8
Sample B Female 203.3
Sample C Male 169.0
Sample D Male 174.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org