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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:443.3 nTPM
FANTOM5:914.7 Scaled Tags Per Million
Pig:377.1 nTPM

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

443.3
Sample id Sample description nTPM
Area postrema
nTPM: 428.2
2799 Male, age 61, both hemispheres 492.5
2306 Male, age 80, both hemispheres 452.5
2054 Male, age 76, both hemispheres 339.5
Dorsal medullary reticular nucleus
nTPM: 335.7
2040 Female, age 85, both hemispheres 353.5
2373 Male, age 61, both hemispheres 351.2
2088 Male, age 76, both hemispheres 302.4
Dorsal motor vagal complex
nTPM: 347.3
2797 Male, age 61, both hemispheres 446.2
2185 Male, age 76, both hemispheres 403.9
2643 Male, age 74, both hemispheres 363.7
2133 Female, age 91, both hemispheres 349.5
2844 Male, age 55, unknown 338.5
2813 Female, age 72, unknown 308.1
2000 Male, age 74, unknown 297.0
2807 Female, age 85, both hemispheres 271.8
Gigantocellular reticular nuclei, medullary
nTPM: 372.4
2314 Male, age 61, both hemispheres 547.9
2310 Male, age 80, both hemispheres 380.3
2387 Female, age 91, both hemispheres 359.7
1876 Female, age 85, both hemispheres 351.7
2462 Male, age 74, both hemispheres 303.9
2022 Male, age 76, right hemisphere 290.8
Gigantocellular reticular nuclei, pars
nTPM: 333.3
2336 Male, age 61, both hemispheres 390.5
2330 Male, age 80, both hemispheres 349.0
2706 Male, age 80, both hemispheres 323.2
2084 Female, age 85, both hemispheres 305.4
2168 Male, age 76, both hemispheres 298.3
Inferior olive
nTPM: 433.9
2628 Female, age 91, both hemispheres 481.3
2563 Male, age 74, both hemispheres 477.6
2178 Male, age 61, both hemispheres 446.2
2085 Female, age 85, both hemispheres 382.2
2379 Male, age 80, both hemispheres 382.2
Lateral medullary reticular nucleus
nTPM: 380.9
2305 Male, age 74, both hemispheres 404.4
2852 Male, age 80, both hemispheres 401.2
2374 Male, age 61, both hemispheres 395.5
2804 Female, age 91, both hemispheres 388.7
2044 Male, age 76, both hemispheres 351.5
2190 Female, age 85, both hemispheres 344.2
Medial olivary nucleus
nTPM: 443.3
1943 Male, age 61, both hemispheres 466.4
2851 Male, age 80, both hemispheres 455.1
1962 Male, age 76, both hemispheres 448.7
2138 Female, age 91, both hemispheres 403.2
Medial vestibular nucleus
nTPM: 387.2
2624 Male, age 61, both hemispheres 542.2
2803 Female, age 91, both hemispheres 432.3
2801 Male, age 74, both hemispheres 424.3
2093 Male, age 80, both hemispheres 332.8
2134 Male, age 76, both hemispheres 306.2
2743 Female, age 85, both hemispheres 285.6
Motor hypoglossal nucleus
nTPM: 320.2
2182 Male, age 80, both hemispheres 395.2
2125 Female, age 91, both hemispheres 377.9
2132 Female, age 85, both hemispheres 337.8
2277 Male, age 76, both hemispheres 247.6
2461 Male, age 61, both hemispheres 242.6
Nucleus ambiguus
nTPM: 312.5
2071 Male, age 76, both hemispheres 377.2
2096 Female, age 85, both hemispheres 247.9
Nucleus cuneatus
nTPM: 366.5
2564 Male, age 74, both hemispheres 426.6
2376 Male, age 61, both hemispheres 413.0
2562 Male, age 61, both hemispheres 401.1
2380 Male, age 80, both hemispheres 377.1
2808 Female, age 85, both hemispheres 372.3
2381 Male, age 80, both hemispheres 350.8
2805 Female, age 91, both hemispheres 325.5
2100 Male, age 76, both hemispheres 320.7
2131 Male, age 76, both hemispheres 311.4
Nucleus gracilis
nTPM: 404.7
2627 Male, age 74, both hemispheres 491.6
2382 Male, age 80, both hemispheres 409.0
2299 Female, age 85, both hemispheres 313.6
Nucleus raphe obscurus
nTPM: 430.1
2845 Female, age 85, midline 441.5
2142 Male, age 76, midline 430.4
2800 Male, age 61, midline 418.5
Nucleus raphe pallidus
nTPM: 428.2
1924 Male, age 61, midline 503.2
2183 Male, age 80, midline 409.4
2145 Male, age 76, midline 372.1
Nucleus tractus solitarii
nTPM: 264.8
2656 Male, age 76, both hemispheres 307.5
2307 Male, age 80, both hemispheres 271.8
2191 Female, age 85, both hemispheres 260.8
2144 Female, age 91, right hemisphere 219.0
Parvicellular reticular nuclei
nTPM: 334.8
2119 Male, age 80, both hemispheres 373.0
2095 Male, age 76, both hemispheres 358.7
2558 Male, age 74, both hemispheres 272.9
Parvicellular reticular nuclei, medullary
nTPM: 343.6
2189 Female, age 91, both hemispheres 367.5
2091 Female, age 85, both hemispheres 335.8
2181 Male, age 80, left hemisphere 327.6
Peritrigeminal nucleus
nTPM: 394.6
2136 Male, age 76, both hemispheres 408.3
2179 Male, age 61, both hemispheres 403.2
2067 Female, age 85, both hemispheres 372.3
Prepositus hypoglossal nucleus
nTPM: 321.7
2855 Female, age 85, right hemisphere 343.8
2086 Male, age 80, both hemispheres 299.5
Spinal trigeminal nucleus, caudal
nTPM: 385.8
2312 Male, age 61, both hemispheres 448.5
2390 Female, age 91, both hemispheres 391.9
2642 Male, age 74, both hemispheres 388.7
2308 Male, age 80, both hemispheres 357.3
2447 Male, age 76, both hemispheres 342.5
Spinal trigeminal nucleus, interpolar
nTPM: 372.6
2625 Male, age 61, both hemispheres 485.1
2389 Female, age 91, both hemispheres 377.8
2033 Male, age 80, both hemispheres 352.1
2066 Male, age 76, right hemisphere 340.7
2386 Female, age 85, both hemispheres 307.4
Spinal vestibular nucleus
nTPM: 355.0
2796 Male, age 61, both hemispheres 437.3
2806 Female, age 85, both hemispheres 364.0
2748 Male, age 76, both hemispheres 349.3
2186 Female, age 91, both hemispheres 345.9
2780 Male, age 80, both hemispheres 324.9
2384 Male, age 74, both hemispheres 308.3
Superior vestibular nucleus
nTPM: 349.0
2061 Male, age 76, both hemispheres 356.9
2383 Male, age 74, both hemispheres 346.0
2015 Male, age 80, both hemispheres 344.1
Ventral medullary reticular nucleus
nTPM: 366.8
2372 Male, age 61, both hemispheres 390.4
2060 Male, age 76, both hemispheres 343.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 375.4
2180 Male, age 61, both hemispheres 438.4
1986 Male, age 76, both hemispheres 386.6
2302 Female, age 91, both hemispheres 374.2
2118 Male, age 80, both hemispheres 357.6
2741 Female, age 85, both hemispheres 320.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

914.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 914.7
FF:10155-103A2 76 years, female 1001.7
FF:10174-103C3 60 years, female 933.9
FF:10038-101F2 18-64 years, mixed 808.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 377.2
Samples: 4

Max nTPM: 423.1
Min nTPM: 322.1
Sample A Female 345.3
Sample B Female 322.1
Sample C Male 418.1
Sample D Male 423.1

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