MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:324.0 nTPM
HPA Brain:387.8 nTPM
GTEx:324.0 nTPM
FANTOM5:1490.1 Scaled Tags Per Million
Pig:369.6 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 387.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 348.6
2666 Male, age 74, left hemisphere 396.9
1870 Female, age 42, unknown 373.7
2019 Male, age 18, unknown 371.8
2586 Male, age 75, left hemisphere 363.4
1830 Male, age 51, unknown 359.4
1833 Male, age 53, unknown 355.6
1827 Male, age 72, unknown 338.9
2411 Female, age 72, unknown 333.5
2828 Female, age 72, unknown 315.6
2219 Male, age 76, both hemispheres 277.4
Dorsal raphe nucleus
nTPM: 323.4
2750 Male, age 76, both hemispheres 367.4
1828 Male, age 53, unknown 341.7
2047 Male, age 72, unknown 304.0
2016 Female, age 72, unknown 302.3
2298 Female, age 72, unknown 301.5
Inferior colliculus
nTPM: 312.2
2849 Male, age 72, unknown 338.8
2097 Female, age 72, unknown 314.3
1848 Female, age 42, unknown 298.0
1890 Male, age 53, unknown 297.5
Median raphe nucleus
nTPM: 376.5
2220 Male, age 76, midline 376.5
Periaquaductal grey, anterior
nTPM: 312.6
2502 Female, age 75, unknown 332.2
1947 Male, age 18, unknown 313.3
1795 Male, age 51, unknown 292.2
Periaquaductal grey, dorsal
nTPM: 301.1
2850 Male, age 76, both hemispheres 361.6
1831 Male, age 72, unknown 315.4
2464 Female, age 72, unknown 267.3
1840 Male, age 53, unknown 259.9
Periaquaductal grey, lateral
nTPM: 313.4
2140 Male, age 76, both hemispheres 329.3
2053 Male, age 18, unknown 325.0
2272 Male, age 74, both hemispheres 286.0
Pretectal area
nTPM: 338.2
1817 Female, age 42, unknown 412.8
1815 Male, age 53, unknown 396.5
2007 Male, age 72, unknown 354.5
2667 Female, age 75, unknown 353.9
1816 Male, age 51, unknown 345.3
2316 Male, age 76, right hemisphere 339.9
2825 Male, age 18, unknown 339.3
2407 Male, age 75, both hemispheres 300.2
2224 Female, age 72, unknown 297.8
1944 Female, age 72, unknown 290.5
2273 Male, age 74, both hemispheres 289.1
Red nucleus
nTPM: 387.8
1821 Female, age 72, unknown 487.2
2503 Female, age 72, unknown 400.8
1904 Male, age 53, unknown 397.5
1865 Male, age 51, unknown 394.1
1954 Female, age 42, unknown 394.0
2769 Male, age 72, unknown 391.8
2584 Male, age 75, left hemisphere 386.7
2227 Male, age 72, unknown 374.0
2725 Female, age 75, unknown 359.4
2785 Male, age 18, unknown 359.0
2823 Male, age 76, right hemisphere 356.4
2588 Male, age 74, left hemisphere 352.1
Substantia nigra
nTPM: 335.7
2665 Male, age 74, both hemispheres 389.4
1851 Male, age 51, unknown 362.6
1916 Female, age 42, unknown 354.2
2699 Male, age 18, unknown 345.8
1889 Female, age 72, unknown 345.2
2583 Male, age 75, right hemisphere 332.8
1941 Male, age 53, unknown 330.4
2590 Female, age 75, unknown 329.4
2241 Male, age 72, unknown 286.5
2409 Female, age 72, unknown 281.1
Superior colliculus
nTPM: 333.2
1913 Female, age 42, unknown 371.9
2587 Male, age 74, left hemisphere 369.1
1995 Male, age 72, unknown 353.5
1839 Male, age 51, unknown 346.8
2664 Male, age 75, both hemispheres 332.5
1895 Male, age 76, right hemisphere 330.1
2668 Female, age 75, unknown 323.2
1796 Male, age 53, unknown 310.8
2261 Male, age 18, unknown 306.3
2087 Female, age 72, unknown 288.2
Ventral tegmental area
nTPM: 340.0
2223 Female, age 72, unknown 451.7
2021 Male, age 53, unknown 331.9
2218 Male, age 76, both hemispheres 330.3
2410 Female, age 72, unknown 319.1
1915 Female, age 42, unknown 314.9
1942 Male, age 51, unknown 292.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 324.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 324.0
Samples: 139

Max nTPM: 736.8
Min nTPM: 179.2
Std nTPM: 87.8
Median nTPM: 308.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 736.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 592.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 503.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 499.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 498.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 488.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 483.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 480.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 475.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 473.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 468.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1490.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1490.1
FF:10158-103A5 76 years, female 1490.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 369.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 350.2
Samples: 4

Max nTPM: 438.8
Min nTPM: 292.4
Sample A Female 438.8
Sample B Female 292.4
Sample C Male 327.6
Sample D Male 341.9
Midbrain
nTPM: 357.9
Samples: 4

Max nTPM: 519.4
Min nTPM: 278.5
Sample A Female 519.4
Sample B Female 341.3
Sample C Male 278.5
Sample D Male 292.5
Periaqueductal gray
nTPM: 288.7
Samples: 3

Max nTPM: 308.4
Min nTPM: 270.6
Sample B Female 287.2
Sample C Male 308.4
Sample D Male 270.6
Superior colliculi
nTPM: 369.6
Samples: 4

Max nTPM: 474.3
Min nTPM: 316.4
Sample A Female 474.3
Sample B Female 357.0
Sample C Male 316.4
Sample D Male 330.5

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