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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:377.7 nTPM
HPA Brain:397.5 nTPM
GTEx:377.7 nTPM
FANTOM5:1250.9 Scaled Tags Per Million
Pig:435.4 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

397.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 370.6
2565 Male, age 75, midline 454.6
1981 Female, age 72, midline 410.8
2816 Male, age 47, midline 378.8
2048 Male, age 55, midline 320.0
2194 Female, age 79, both hemispheres 288.9
Cervical spinal cord, dorsal horn
nTPM: 366.8
2296 Male, age 66, both hemispheres 446.7
2173 Female, age 72, unknown 436.4
2069 Male, age 47, both hemispheres 385.6
1877 Male, age 55, unknown 344.0
2297 Male, age 75, both hemispheres 330.8
2721 Male, age 90, both hemispheres 257.3
Cervical spinal cord, ventral horn
nTPM: 397.5
2098 Female, age 72, unknown 485.6
2809 Male, age 90, both hemispheres 445.0
2480 Male, age 75, both hemispheres 420.6
2068 Male, age 55, unknown 380.5
2295 Male, age 66, both hemispheres 360.5
2820 Female, age 79, both hemispheres 292.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 377.7
Samples: 159

Max nTPM: 694.3
Min nTPM: 187.7
Std nTPM: 81.5
Median nTPM: 379.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 694.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 578.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 564.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 559.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 543.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 535.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 529.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 523.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 519.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 518.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 508.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 496.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 494.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 487.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 481.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 478.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 476.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 475.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 468.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 465.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 462.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 462.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 461.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 461.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 457.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 453.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 449.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 448.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 442.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 435.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 432.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 431.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 428.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 426.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 425.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 425.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 424.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 423.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 422.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 421.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 420.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 420.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 419.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 419.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 417.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 417.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 416.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 415.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 415.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 413.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 408.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 408.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 406.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 406.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 405.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 404.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 403.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 403.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 403.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 403.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 402.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 400.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 400.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 398.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 398.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 397.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 395.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 394.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 393.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 387.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 386.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 384.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 381.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 381.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 381.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 380.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 380.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 379.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 379.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 379.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 378.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 377.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 377.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 376.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 374.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 373.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 371.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 369.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 367.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 363.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 358.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 356.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 355.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 355.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 355.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 354.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 354.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 353.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 353.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 352.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 351.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 348.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 347.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 345.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 342.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 341.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 340.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 340.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 338.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 337.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 333.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 333.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 333.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 333.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 329.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 328.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 327.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 325.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 323.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 322.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 321.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 321.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 321.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 320.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 318.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 318.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 317.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 316.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 316.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 313.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 312.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 309.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 309.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 307.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 307.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 303.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 298.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 295.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 295.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 289.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 287.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 285.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 284.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 284.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 273.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 266.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 260.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 255.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 255.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 241.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 234.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 230.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 227.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 223.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 214.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 213.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 208.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 201.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 187.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1250.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1250.9
FF:10181-103D1 60 years, female 1298.7
FF:10159-103A6 76 years, female 1203.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

435.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 405.5
Samples: 4

Max nTPM: 521.6
Min nTPM: 342.4
Sample A Female 342.4
Sample B Female 391.3
Sample C Male 521.6
Sample D Male 366.6
Ventral spinal cord
nTPM: 435.4
Samples: 4

Max nTPM: 476.4
Min nTPM: 398.4
Sample A Female 398.4
Sample B Female 416.2
Sample C Male 476.4
Sample D Male 450.6

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