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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:229.8 nTPM
HPA Brain:207.2 nTPM
GTEx:229.8 nTPM
FANTOM5:402.3 Scaled Tags Per Million
Pig:112.2 nTPM
Mouse:68.6 nTPM
Allen mouse:4.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.2
Sample id Sample description nTPM
Amygdala
nTPM: 163.2
2514 Male, age 75, right hemisphere 187.3
2814 Male, age 76, right hemisphere 181.2
2517 Female, age 94, left hemisphere 161.1
2695 Female, age 67, right hemisphere 151.5
1987 Female, age 91, left hemisphere 134.9
Basal amygdala
nTPM: 161.9
2827 Female, age 67, right hemisphere 270.9
2609 Male, age 75, right hemisphere 192.1
2110 Male, age 80, left hemisphere 140.6
2685 Female, age 94, left hemisphere 139.9
1955 Male, age 76, both hemispheres 116.7
2243 Female, age 91, right hemisphere 110.9
Central amygdala
nTPM: 162.2
2826 Female, age 94, left hemisphere 200.6
1905 Male, age 76, both hemispheres 163.9
2515 Male, age 75, right hemisphere 159.2
2239 Male, age 80, left hemisphere 148.9
2701 Female, age 91, right hemisphere 138.4
Corticomedial amygdala
nTPM: 135.8
2428 Male, age 75, right hemisphere 202.3
2535 Female, age 67, right hemisphere 190.9
2829 Male, age 80, left hemisphere 129.7
2429 Female, age 94, left hemisphere 124.7
2242 Female, age 91, right hemisphere 92.5
2240 Male, age 76, both hemispheres 74.8
Lateral amygdala
nTPM: 207.2
2830 Female, age 67, right hemisphere 309.5
2516 Male, age 75, right hemisphere 253.5
2256 Male, age 80, left hemisphere 182.5
2534 Female, age 94, left hemisphere 182.2
1883 Male, age 76, both hemispheres 159.1
2255 Female, age 91, right hemisphere 156.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 229.8
Samples: 152

Max nTPM: 571.7
Min nTPM: 3.7
Std nTPM: 106.4
Median nTPM: 200.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 571.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 469.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 461.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 450.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 443.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 440.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 436.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 434.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 426.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 421.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 419.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 412.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 402.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 399.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 395.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 379.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 377.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 369.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 369.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 368.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 364.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 363.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 360.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 356.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 355.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 352.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 351.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 337.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 336.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 336.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 335.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 325.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 319.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 318.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 314.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 313.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 312.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 309.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 306.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 304.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 300.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 300.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 299.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 298.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 293.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 291.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 289.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 284.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 283.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 281.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 272.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 264.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 260.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 253.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 252.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 251.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 246.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 245.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 241.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 237.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 236.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 229.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 224.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 217.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 217.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 214.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 212.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 212.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 212.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 211.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 208.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 206.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 202.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 201.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 199.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 197.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 194.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 193.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 192.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 192.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 192.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 190.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 184.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 182.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 182.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 180.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 174.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 169.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 165.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 164.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 161.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 159.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 159.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 159.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 159.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 158.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 157.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 156.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 155.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 153.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 151.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 150.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 150.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 148.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 146.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 146.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 145.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 144.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 143.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 141.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 138.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 134.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 131.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 125.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 121.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 120.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 119.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 118.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 115.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 115.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 111.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 108.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 103.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 95.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 93.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 93.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 82.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 48.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

402.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 402.3
FF:10151-102I7 76 years, female 402.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.2
Pig sample Sample description nTPM
Amygdala
nTPM: 112.2
Samples: 4

Max nTPM: 127.4
Min nTPM: 85.3
Sample A Female 117.6
Sample B Female 127.4
Sample C Male 118.4
Sample D Male 85.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 68.7
Samples: 4

Max nTPM: 97.2
Min nTPM: 51.4
Sample A Male 58.4
Sample B Male 51.4
Sample C Female 97.2
Sample D Female 67.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.3
70437828 Antisense, RP_050614_03_A03, Mouse strain C57BL/6J (56 days, male) 4.3

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