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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:201.4 nTPM
HPA Brain:193.7 nTPM
GTEx:201.4 nTPM
FANTOM5:529.8 Scaled Tags Per Million
Pig:266.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.3
2194 Female, age 79, both hemispheres 182.7
1981 Female, age 72, midline 162.5
2816 Male, age 47, midline 134.5
2565 Male, age 75, midline 132.2
2048 Male, age 55, midline 119.6
Cervical spinal cord, dorsal horn
nTPM: 160.8
2296 Male, age 66, both hemispheres 218.6
2173 Female, age 72, unknown 217.5
1877 Male, age 55, unknown 160.0
2069 Male, age 47, both hemispheres 147.0
2721 Male, age 90, both hemispheres 117.0
2297 Male, age 75, both hemispheres 104.8
Cervical spinal cord, ventral horn
nTPM: 193.7
2480 Male, age 75, both hemispheres 229.5
2068 Male, age 55, unknown 210.8
2809 Male, age 90, both hemispheres 206.4
2820 Female, age 79, both hemispheres 203.0
2295 Male, age 66, both hemispheres 200.0
2098 Female, age 72, unknown 112.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 201.4
Samples: 159

Max nTPM: 532.3
Min nTPM: 38.7
Std nTPM: 75.4
Median nTPM: 200.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 532.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 391.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 377.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 368.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 364.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 338.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 336.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 330.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 324.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 317.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 312.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 307.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 306.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 304.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 303.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 302.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 299.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 292.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 287.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 286.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 284.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 281.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 274.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 273.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 272.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 272.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 270.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 269.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 269.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 266.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 259.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 259.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 255.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 254.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 253.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 250.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 250.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 249.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 249.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 247.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 244.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 242.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 241.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 240.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 238.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 238.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 237.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 235.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 234.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 233.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 232.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 229.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 228.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 228.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 227.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 226.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 225.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 224.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 223.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 220.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 219.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 218.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 218.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 218.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 216.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 214.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 212.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 210.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 209.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 209.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 208.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 208.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 208.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 207.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 206.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 203.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 202.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 201.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 200.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 200.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 199.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 197.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 194.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 193.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 193.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 184.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 182.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 181.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 180.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 180.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 179.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 178.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 174.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 174.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 173.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 173.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 171.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 169.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 169.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 168.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 166.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 165.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 165.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 164.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 164.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 164.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 163.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 163.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 161.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 161.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 159.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 157.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 155.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 155.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 154.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 151.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 150.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 150.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 150.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 148.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 147.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 147.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 145.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 139.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 139.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 138.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 136.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 132.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 130.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 125.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 125.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 123.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 123.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 122.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 116.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 116.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 110.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 104.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 98.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 98.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 96.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 91.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 82.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 80.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 75.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 75.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 57.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 43.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 38.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

529.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 529.8
FF:10181-103D1 60 years, female 817.8
FF:10159-103A6 76 years, female 241.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

266.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 152.5
Samples: 4

Max nTPM: 215.7
Min nTPM: 84.1
Sample A Female 215.7
Sample B Female 134.2
Sample C Male 84.1
Sample D Male 175.9
Ventral spinal cord
nTPM: 266.6
Samples: 4

Max nTPM: 318.3
Min nTPM: 210.5
Sample A Female 318.3
Sample B Female 294.3
Sample C Male 243.1
Sample D Male 210.5

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