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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

82.744
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:242.1 nTPM
FANTOM5:164.2 Scaled Tags Per Million
Pig:179.7 nTPM
Allen mouse:14.1 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA042527
Medulla oblongata mean intensity 82.744
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 52.173
Raphe magnus nucleus 29.703
Cochlear nucleus 45.554
Lateral paragigantocellular nucleus 34.715
Raphe pallidus nucleus 40.206
Facial nucleus 45.778
Hypoglossal nucleus 82.744
Ambiguus nucleus 57.727
External cuneate nucleus 67.116
Inferior olivary nucleus 45.176
Raphe obscures nucleus 40.334
Dorsal motor nucleus of vagus 64.734

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.1
Sample id Sample description nTPM
Area postrema
nTPM: 88.3
2054 Male, age 76, both hemispheres 117.7
2306 Male, age 80, both hemispheres 76.6
2799 Male, age 61, both hemispheres 70.8
Dorsal medullary reticular nucleus
nTPM: 173.3
2040 Female, age 85, both hemispheres 234.4
2373 Male, age 61, both hemispheres 144.4
2088 Male, age 76, both hemispheres 141.1
Dorsal motor vagal complex
nTPM: 151.3
2133 Female, age 91, both hemispheres 210.8
2643 Male, age 74, both hemispheres 164.0
2000 Male, age 74, unknown 160.4
2185 Male, age 76, both hemispheres 149.6
2797 Male, age 61, both hemispheres 148.1
2813 Female, age 72, unknown 140.0
2844 Male, age 55, unknown 130.4
2807 Female, age 85, both hemispheres 107.2
Gigantocellular reticular nuclei, medullary
nTPM: 171.6
2462 Male, age 74, both hemispheres 275.0
2310 Male, age 80, both hemispheres 190.2
2022 Male, age 76, right hemisphere 164.0
1876 Female, age 85, both hemispheres 160.3
2387 Female, age 91, both hemispheres 135.1
2314 Male, age 61, both hemispheres 105.1
Gigantocellular reticular nuclei, pars
nTPM: 208.5
2168 Male, age 76, both hemispheres 269.6
2084 Female, age 85, both hemispheres 210.5
2336 Male, age 61, both hemispheres 205.1
2706 Male, age 80, both hemispheres 179.6
2330 Male, age 80, both hemispheres 177.9
Inferior olive
nTPM: 103.1
2628 Female, age 91, both hemispheres 160.5
2085 Female, age 85, both hemispheres 133.2
2563 Male, age 74, both hemispheres 82.9
2178 Male, age 61, both hemispheres 71.6
2379 Male, age 80, both hemispheres 67.4
Lateral medullary reticular nucleus
nTPM: 136.8
2044 Male, age 76, both hemispheres 227.6
2804 Female, age 91, both hemispheres 171.1
2374 Male, age 61, both hemispheres 148.9
2190 Female, age 85, both hemispheres 121.2
2852 Male, age 80, both hemispheres 87.7
2305 Male, age 74, both hemispheres 64.3
Medial olivary nucleus
nTPM: 69.4
2851 Male, age 80, both hemispheres 123.8
2138 Female, age 91, both hemispheres 61.6
1962 Male, age 76, both hemispheres 58.9
1943 Male, age 61, both hemispheres 33.4
Medial vestibular nucleus
nTPM: 212.2
2624 Male, age 61, both hemispheres 278.7
2803 Female, age 91, both hemispheres 217.3
2134 Male, age 76, both hemispheres 213.0
2093 Male, age 80, both hemispheres 198.5
2743 Female, age 85, both hemispheres 184.8
2801 Male, age 74, both hemispheres 181.3
Motor hypoglossal nucleus
nTPM: 186.0
2461 Male, age 61, both hemispheres 283.8
2125 Female, age 91, both hemispheres 213.3
2132 Female, age 85, both hemispheres 184.6
2182 Male, age 80, both hemispheres 156.8
2277 Male, age 76, both hemispheres 91.7
Nucleus ambiguus
nTPM: 151.6
2096 Female, age 85, both hemispheres 225.5
2071 Male, age 76, both hemispheres 77.6
Nucleus cuneatus
nTPM: 148.1
2131 Male, age 76, both hemispheres 237.7
2100 Male, age 76, both hemispheres 211.8
2564 Male, age 74, both hemispheres 172.9
2562 Male, age 61, both hemispheres 157.0
2805 Female, age 91, both hemispheres 138.4
2376 Male, age 61, both hemispheres 127.4
2381 Male, age 80, both hemispheres 118.7
2808 Female, age 85, both hemispheres 102.2
2380 Male, age 80, both hemispheres 66.6
Nucleus gracilis
nTPM: 98.7
2627 Male, age 74, both hemispheres 120.8
2299 Female, age 85, both hemispheres 94.4
2382 Male, age 80, both hemispheres 81.0
Nucleus raphe obscurus
nTPM: 103.5
2800 Male, age 61, midline 146.0
2845 Female, age 85, midline 126.5
2142 Male, age 76, midline 38.1
Nucleus raphe pallidus
nTPM: 104.0
2183 Male, age 80, midline 156.3
1924 Male, age 61, midline 92.9
2145 Male, age 76, midline 62.7
Nucleus tractus solitarii
nTPM: 119.0
2191 Female, age 85, both hemispheres 126.5
2656 Male, age 76, both hemispheres 119.4
2307 Male, age 80, both hemispheres 116.7
2144 Female, age 91, right hemisphere 113.4
Parvicellular reticular nuclei
nTPM: 198.1
2558 Male, age 74, both hemispheres 279.8
2095 Male, age 76, both hemispheres 160.8
2119 Male, age 80, both hemispheres 153.8
Parvicellular reticular nuclei, medullary
nTPM: 189.9
2091 Female, age 85, both hemispheres 208.0
2189 Female, age 91, both hemispheres 204.2
2181 Male, age 80, left hemisphere 157.4
Peritrigeminal nucleus
nTPM: 166.1
2179 Male, age 61, both hemispheres 181.2
2067 Female, age 85, both hemispheres 162.1
2136 Male, age 76, both hemispheres 155.1
Prepositus hypoglossal nucleus
nTPM: 173.3
2855 Female, age 85, right hemisphere 187.1
2086 Male, age 80, both hemispheres 159.5
Spinal trigeminal nucleus, caudal
nTPM: 195.6
2390 Female, age 91, both hemispheres 320.0
2447 Male, age 76, both hemispheres 244.4
2642 Male, age 74, both hemispheres 153.9
2312 Male, age 61, both hemispheres 132.3
2308 Male, age 80, both hemispheres 127.2
Spinal trigeminal nucleus, interpolar
nTPM: 242.1
2625 Male, age 61, both hemispheres 368.4
2066 Male, age 76, right hemisphere 253.1
2389 Female, age 91, both hemispheres 237.0
2033 Male, age 80, both hemispheres 179.5
2386 Female, age 85, both hemispheres 172.4
Spinal vestibular nucleus
nTPM: 177.8
2796 Male, age 61, both hemispheres 226.2
2186 Female, age 91, both hemispheres 201.0
2780 Male, age 80, both hemispheres 187.0
2806 Female, age 85, both hemispheres 180.2
2748 Male, age 76, both hemispheres 160.6
2384 Male, age 74, both hemispheres 111.8
Superior vestibular nucleus
nTPM: 123.0
2015 Male, age 80, both hemispheres 146.1
2061 Male, age 76, both hemispheres 132.9
2383 Male, age 74, both hemispheres 90.1
Ventral medullary reticular nucleus
nTPM: 125.6
2060 Male, age 76, both hemispheres 143.3
2372 Male, age 61, both hemispheres 107.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 151.5
2741 Female, age 85, both hemispheres 197.9
1986 Male, age 76, both hemispheres 168.5
2302 Female, age 91, both hemispheres 152.4
2180 Male, age 61, both hemispheres 142.4
2118 Male, age 80, both hemispheres 96.2

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 164.2
FF:10038-101F2 18-64 years, mixed 273.4
FF:10155-103A2 76 years, female 111.6
FF:10174-103C3 60 years, female 107.7

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 179.7
Samples: 4

Max nTPM: 221.6
Min nTPM: 104.6
Sample A Female 172.1
Sample B Female 220.6
Sample C Male 221.6
Sample D Male 104.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.1
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 14.1
68196909 Antisense, RP_041116_01_D02, Mouse strain C57BL/6J (56 days, male) 14.1

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