MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.6 nTPM
HPA Brain:183.5 nTPM
GTEx:142.6 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:250.7 nTPM
Mouse:332.5 nTPM
Allen mouse:18.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 183.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.3
2019 Male, age 18, unknown 192.1
2586 Male, age 75, left hemisphere 180.5
2828 Female, age 72, unknown 167.9
1827 Male, age 72, unknown 166.1
2666 Male, age 74, left hemisphere 160.4
2219 Male, age 76, both hemispheres 160.3
2411 Female, age 72, unknown 125.6
1870 Female, age 42, unknown 110.2
1833 Male, age 53, unknown 109.9
1830 Male, age 51, unknown 99.8
Dorsal raphe nucleus
nTPM: 125.1
1828 Male, age 53, unknown 146.7
2047 Male, age 72, unknown 140.8
2298 Female, age 72, unknown 134.5
2750 Male, age 76, both hemispheres 120.1
2016 Female, age 72, unknown 83.3
Inferior colliculus
nTPM: 137.8
2097 Female, age 72, unknown 155.9
1890 Male, age 53, unknown 143.3
1848 Female, age 42, unknown 127.5
2849 Male, age 72, unknown 124.5
Median raphe nucleus
nTPM: 153.0
2220 Male, age 76, midline 153.0
Periaquaductal grey, anterior
nTPM: 137.5
1795 Male, age 51, unknown 157.6
1947 Male, age 18, unknown 139.2
2502 Female, age 75, unknown 115.8
Periaquaductal grey, dorsal
nTPM: 102.6
1831 Male, age 72, unknown 119.2
2850 Male, age 76, both hemispheres 104.7
2464 Female, age 72, unknown 93.7
1840 Male, age 53, unknown 92.9
Periaquaductal grey, lateral
nTPM: 77.8
2053 Male, age 18, unknown 81.7
2272 Male, age 74, both hemispheres 80.3
2140 Male, age 76, both hemispheres 71.4
Pretectal area
nTPM: 183.5
2007 Male, age 72, unknown 281.1
1944 Female, age 72, unknown 278.7
1816 Male, age 51, unknown 271.4
1817 Female, age 42, unknown 270.0
2667 Female, age 75, unknown 244.3
1815 Male, age 53, unknown 210.6
2407 Male, age 75, both hemispheres 103.1
2825 Male, age 18, unknown 99.1
2224 Female, age 72, unknown 92.2
2316 Male, age 76, right hemisphere 86.1
2273 Male, age 74, both hemispheres 81.7
Red nucleus
nTPM: 132.7
2785 Male, age 18, unknown 191.5
1821 Female, age 72, unknown 161.9
2588 Male, age 74, left hemisphere 152.3
2584 Male, age 75, left hemisphere 130.7
1954 Female, age 42, unknown 130.4
2823 Male, age 76, right hemisphere 126.3
2503 Female, age 72, unknown 124.2
2769 Male, age 72, unknown 121.4
1865 Male, age 51, unknown 117.9
2227 Male, age 72, unknown 113.9
1904 Male, age 53, unknown 113.6
2725 Female, age 75, unknown 108.4
Substantia nigra
nTPM: 177.1
1916 Female, age 42, unknown 265.8
2665 Male, age 74, both hemispheres 262.8
1889 Female, age 72, unknown 258.9
1941 Male, age 53, unknown 208.7
1851 Male, age 51, unknown 176.6
2699 Male, age 18, unknown 134.8
2409 Female, age 72, unknown 133.7
2583 Male, age 75, right hemisphere 121.9
2241 Male, age 72, unknown 117.3
2590 Female, age 75, unknown 91.0
Superior colliculus
nTPM: 150.1
2668 Female, age 75, unknown 246.2
2087 Female, age 72, unknown 216.9
1796 Male, age 53, unknown 166.2
1895 Male, age 76, right hemisphere 158.2
2664 Male, age 75, both hemispheres 140.8
2261 Male, age 18, unknown 137.7
1839 Male, age 51, unknown 116.7
1913 Female, age 42, unknown 111.3
2587 Male, age 74, left hemisphere 103.9
1995 Male, age 72, unknown 103.2
Ventral tegmental area
nTPM: 140.6
2218 Male, age 76, both hemispheres 181.4
1915 Female, age 42, unknown 176.2
2410 Female, age 72, unknown 167.1
1942 Male, age 51, unknown 129.3
2021 Male, age 53, unknown 94.9
2223 Female, age 72, unknown 94.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 142.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.6
Samples: 139

Max nTPM: 443.6
Min nTPM: 22.2
Std nTPM: 84.7
Median nTPM: 132.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 443.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 391.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 389.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 369.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 318.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 304.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 299.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 277.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 259.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 257.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 253.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 250.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 157.9
Samples: 4

Max nTPM: 238.7
Min nTPM: 92.1
Sample A Female 238.7
Sample B Female 101.8
Sample C Male 198.9
Sample D Male 92.1
Midbrain
nTPM: 186.4
Samples: 4

Max nTPM: 317.4
Min nTPM: 83.3
Sample A Female 83.3
Sample B Female 141.9
Sample C Male 317.4
Sample D Male 202.9
Periaqueductal gray
nTPM: 115.1
Samples: 3

Max nTPM: 134.8
Min nTPM: 87.5
Sample B Female 123.0
Sample C Male 134.8
Sample D Male 87.5
Superior colliculi
nTPM: 250.7
Samples: 4

Max nTPM: 364.2
Min nTPM: 147.1
Sample A Female 276.7
Sample B Female 147.1
Sample C Male 364.2
Sample D Male 214.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 332.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 332.5
Samples: 4

Max nTPM: 340.5
Min nTPM: 325.9
Sample A Male 340.5
Sample B Male 325.9
Sample C Female 326.0
Sample D Female 337.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.3
68196909 Antisense, RP_041116_01_D02, Mouse strain C57BL/6J (56 days, male) 18.3

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