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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
275.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 135.7
1984
Male, age 76, both hemispheres
169.9
2301
Female, age 85, both hemispheres
144.2
2188
Female, age 91, both hemispheres
125.8
2090
Male, age 80, both hemispheres
102.8
Dorsal cochlear nucleus nTPM: 132.3
2058
Male, age 76, both hemispheres
150.0
2802
Male, age 74, right hemisphere
149.2
2370
Male, age 61, both hemispheres
124.5
2187
Female, age 91, both hemispheres
123.8
2378
Male, age 80, both hemispheres
113.7
Dorsal tegmental nucleus nTPM: 137.7
2083
Male, age 80, both hemispheres
158.2
2358
Male, age 61, both hemispheres
153.3
1936
Male, age 76, left hemisphere
144.6
2326
Male, age 74, both hemispheres
94.7
Dorsolateral tegmental area nTPM: 116.7
2141
Male, age 76, both hemispheres
151.7
2654
Male, age 80, both hemispheres
146.3
2751
Female, age 85, both hemispheres
138.9
2360
Male, age 74, both hemispheres
81.8
2337
Male, age 61, both hemispheres
64.9
Kolliker-Fuse nucleus nTPM: 177.3
2163
Male, age 80, both hemispheres
226.1
2793
Female, age 91, left hemisphere
205.8
2315
Male, age 76, right hemisphere
99.8
Lateral lemniscal nuclei nTPM: 228.3
2169
Male, age 76, both hemispheres
288.4
2453
Male, age 74, right hemisphere
277.7
2746
Female, age 85, left hemisphere
206.0
2036
Male, age 80, both hemispheres
202.1
2320
Female, age 91, left hemisphere
167.3
Lateral parabrachial nucleus nTPM: 147.1
2139
Female, age 85, right hemisphere
224.8
2790
Male, age 61, both hemispheres
153.4
2013
Male, age 80, both hemispheres
136.4
2792
Male, age 76, both hemispheres
74.0
Lateral vestibular nucleus nTPM: 178.7
2184
Male, age 76, both hemispheres
232.6
2311
Male, age 80, both hemispheres
124.8
Locus coeruleus nTPM: 191.5
2720
Male, age 74, both hemispheres
289.1
2123
Female, age 91, both hemispheres
259.4
2162
Male, age 80, both hemispheres
180.2
1980
Male, age 76, both hemispheres
168.1
2317
Female, age 72, unknown
160.0
2014
Male, age 55, unknown
153.0
2788
Male, age 74, unknown
130.9
Medial parabrachial nucleus nTPM: 162.1
2854
Male, age 80, both hemispheres
204.8
2156
Male, age 61, both hemispheres
183.4
2786
Male, age 76, both hemispheres
151.0
2463
Female, age 85, right hemisphere
148.6
2170
Female, age 91, both hemispheres
122.6
Medial periolivary nuclei nTPM: 204.5
2171
Female, age 85, both hemispheres
296.7
2063
Male, age 76, both hemispheres
270.6
2458
Female, age 91, both hemispheres
169.3
2791
Male, age 74, right hemisphere
163.1
2081
Male, age 80, both hemispheres
122.9
Motor facial nucleus nTPM: 235.4
2062
Male, age 76, both hemispheres
290.3
2697
Female, age 85, both hemispheres
259.5
2327
Male, age 80, both hemispheres
258.8
2365
Male, age 74, right hemisphere
225.3
2795
Female, age 91, both hemispheres
218.1
2126
Male, age 61, both hemispheres
160.7
Motor trigeminal nucleus nTPM: 174.7
2079
Male, age 80, both hemispheres
212.2
2560
Male, age 74, both hemispheres
208.1
2335
Male, age 61, both hemispheres
166.5
2309
Male, age 76, both hemispheres
158.0
2321
Female, age 91, both hemispheres
128.8
Nuclei of the trapezoid body nTPM: 253.8
2159
Male, age 61, both hemispheres
321.4
2735
Female, age 85, both hemispheres
297.9
1983
Male, age 76, both hemispheres
260.3
2166
Male, age 80, both hemispheres
206.9
2368
Female, age 91, both hemispheres
182.7
Nucleus raphe magnus nTPM: 275.6
2172
Female, age 85, both hemispheres
368.6
2160
Male, age 61, both hemispheres
366.8
2455
Male, age 74, both hemispheres
263.0
2328
Male, age 80, both hemispheres
240.8
2051
Male, age 76, both hemispheres
238.6
2459
Female, age 91, both hemispheres
176.1
Paramedian reticular nucleus nTPM: 180.9
2050
Female, age 85, both hemispheres
241.5
2313
Male, age 61, both hemispheres
202.2
2057
Male, age 80, both hemispheres
171.5
2052
Male, age 76, both hemispheres
108.2
Pedunculopontine tegmental nucleus nTPM: 144.0
1921
Female, age 85, both hemispheres
177.3
2334
Male, age 80, both hemispheres
136.2
2338
Male, age 61, both hemispheres
118.4
Pontine nuclei nTPM: 231.4
2787
Female, age 85, both hemispheres
420.4
1968
Male, age 76, left hemisphere
269.6
2727
Male, age 61, right hemisphere
265.0
1863
Male, age 55, unknown
264.2
2109
Female, age 72, unknown
197.8
2115
Male, age 80, left hemisphere
156.5
2454
Male, age 74, left hemisphere
155.6
2319
Female, age 91, both hemispheres
122.2
Pontine raphe nucleus nTPM: 204.1
2122
Female, age 85, midline
235.6
2853
Male, age 76, midline
172.6
Posteroventral cochlear nucleus nTPM: 117.5
2752
Female, age 85, both hemispheres
187.0
2070
Male, age 76, both hemispheres
143.6
2371
Male, age 61, both hemispheres
120.3
2341
Male, age 80, both hemispheres
93.5
2135
Female, age 91, both hemispheres
42.8
Principal sensory trigeminal nucleus nTPM: 233.8
2158
Male, age 61, both hemispheres
339.5
2008
Male, age 80, left hemisphere
238.4
2324
Male, age 76, both hemispheres
195.0
2367
Female, age 91, left hemisphere
162.2
Reticular pontine nucleus, caudal nTPM: 197.4
2332
Male, age 80, right hemisphere
283.3
2092
Male, age 76, both hemispheres
198.1
2457
Female, age 91, both hemispheres
186.4
2559
Male, age 74, both hemispheres
121.7
Reticular pontine nucleus, oral nTPM: 179.7
2012
Female, age 85, both hemispheres
205.2
2361
Male, age 74, both hemispheres
184.3
2366
Female, age 91, both hemispheres
173.8
2167
Male, age 76, both hemispheres
173.0
1939
Male, age 80, both hemispheres
162.4
Reticulotegmental nucleus nTPM: 176.5
2325
Male, age 76, both hemispheres
215.6
2452
Male, age 74, both hemispheres
171.7
2333
Male, age 80, both hemispheres
160.4
2322
Female, age 91, both hemispheres
158.3
Spinal trigeminal nucleus, oral nTPM: 196.1
2164
Male, age 80, both hemispheres
237.6
2737
Female, age 85, both hemispheres
208.4
1978
Male, age 76, both hemispheres
142.2
Subcoeruleus area nTPM: 166.2
2089
Male, age 76, left hemisphere
208.7
1958
Male, age 80, both hemispheres
202.3
2323
Female, age 91, left hemisphere
184.3
2451
Male, age 74, both hemispheres
124.1
2369
Female, age 85, left hemisphere
111.7
Superior olive nTPM: 212.5
1875
Female, age 85, both hemispheres
281.2
2561
Female, age 91, both hemispheres
211.5
2329
Male, age 80, right hemisphere
209.8
2020
Male, age 76, both hemispheres
200.3
2364
Male, age 74, right hemisphere
159.9
Ventral periolivary nuclei nTPM: 237.5
2165
Male, age 80, both hemispheres
291.7
2130
Female, age 85, both hemispheres
283.7
2794
Female, age 91, left hemisphere
215.1
2023
Male, age 76, both hemispheres
159.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 203.4
2449
Male, age 74, both hemispheres
261.9
2840
Female, age 85, both hemispheres
251.6
1959
Male, age 76, both hemispheres
221.8
2161
Male, age 80, both hemispheres
203.7
2456
Female, age 91, both hemispheres
144.8
2359
Male, age 61, both hemispheres
136.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
257.4
Pig sample
Sample description
nTPM
Pons nTPM: 257.4
Samples: 4
Max nTPM: 342.8
Min nTPM: 151.8
Sample A
Female
342.8
Sample B
Female
151.8
Sample C
Male
210.5
Sample D
Male
324.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
