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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.2
Sample id
Sample description
nTPM
Amygdala nTPM: 110.6
2814
Male, age 76, right hemisphere
132.5
2695
Female, age 67, right hemisphere
124.1
2514
Male, age 75, right hemisphere
99.8
1987
Female, age 91, left hemisphere
98.6
2517
Female, age 94, left hemisphere
97.9
Basal amygdala nTPM: 108.1
2110
Male, age 80, left hemisphere
135.3
2609
Male, age 75, right hemisphere
122.1
2243
Female, age 91, right hemisphere
103.8
2685
Female, age 94, left hemisphere
103.8
1955
Male, age 76, both hemispheres
98.3
2827
Female, age 67, right hemisphere
85.1
Central amygdala nTPM: 114.2
2826
Female, age 94, left hemisphere
151.3
1905
Male, age 76, both hemispheres
118.0
2515
Male, age 75, right hemisphere
115.3
2239
Male, age 80, left hemisphere
98.7
2701
Female, age 91, right hemisphere
87.6
Corticomedial amygdala nTPM: 96.5
2829
Male, age 80, left hemisphere
124.8
2428
Male, age 75, right hemisphere
110.1
2242
Female, age 91, right hemisphere
94.0
2429
Female, age 94, left hemisphere
93.4
2240
Male, age 76, both hemispheres
81.2
2535
Female, age 67, right hemisphere
75.4
Lateral amygdala nTPM: 109.4
2534
Female, age 94, left hemisphere
128.7
1883
Male, age 76, both hemispheres
121.8
2516
Male, age 75, right hemisphere
116.4
2830
Female, age 67, right hemisphere
106.5
2256
Male, age 80, left hemisphere
92.4
2255
Female, age 91, right hemisphere
90.5
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
150.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 150.0
Samples: 152
Max nTPM: 296.5
Min nTPM: 92.1
Std nTPM: 31.7
Median nTPM: 145.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
296.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
240.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
228.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
219.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
217.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
209.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
202.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
202.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
201.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
199.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
199.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
198.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
197.4
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
195.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
194.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
191.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
190.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
188.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
188.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
187.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
183.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
182.4
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
180.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
179.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
179.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
179.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
176.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
175.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
175.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
174.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
174.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
173.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
173.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
171.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
170.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
169.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
168.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
168.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
168.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
167.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
167.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
166.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
166.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
166.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
165.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
164.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
164.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
164.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
163.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
162.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
162.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
160.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
160.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
159.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
159.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
155.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
155.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
155.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
154.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
154.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
150.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
150.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
150.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
150.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
150.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
149.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
149.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
148.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
148.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
147.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
147.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
147.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
146.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
146.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
146.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
145.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
145.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
144.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
144.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
144.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
144.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
143.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
143.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
143.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
142.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
142.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
141.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
141.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
140.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
139.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
139.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
138.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
137.9
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
137.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
137.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
136.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
136.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
136.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
135.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
135.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
134.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
134.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
134.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
134.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
133.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
133.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
133.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
133.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
132.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
130.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
129.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
129.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
128.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
128.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
127.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
127.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
126.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
125.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
125.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
124.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
123.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
122.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
122.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
121.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
120.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
119.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
118.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
118.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
118.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
118.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
117.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
116.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
113.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
113.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
113.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
112.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
112.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
111.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
111.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
110.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
110.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
108.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
107.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
106.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
104.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
104.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
103.1
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
101.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
101.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
100.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
99.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
92.1
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 101.6
Samples: 4
Max nTPM: 106.3
Min nTPM: 97.8
Sample A
Male
103.4
Sample B
Male
98.7
Sample C
Female
106.3
Sample D
Female
97.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
